Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g02749 | ATGTTGGGAGATCAAGGATCAGTGCATCTCAAAATCGATACTCCGATTCCACACTTTTCAAATCAAGAGCTCAAGGCTCTCCAGGTTAATGGTCACATGAAATCCAAGTTGGATCCCTTGGGATTGGAAGAAAGGAAAATTCCTGATGAGTTGGACCTTGCCCATAATGGATTCTCGGAAGCTGATCTTGATCGGGATTTTTTTTGGGGGGTGTGGAAAATGTCCGGATTTCTGTCTGAGAGCCGTCCCACTCAGACCCTCAGATCCGTTTTGATCCGTCTTGAGCATGTATATACCATAGACACACAGTACTGTCCTCTTGATCATGTTATCAACAGCTCTCTTTCAAGTTTGGCGTTCTTGGATTTGAGTATATTTGATCAGTTCTTAATTAGAGGAGAATCAAAGTGGCTGCGACAAACAGGACTTGTGGTGATGGCAAGATTGGAGCGTTTTCTTCAGAAGAGTGATGACAACCCTTTGCTTACACCTGAGATGGATCCTACTCTTAGGAAGCAAATTCAAGAATGCAATTGGCAAGTTGTGAATGCTTCAACTTCAGTTAATTACTTCGATGTTCTGAGGCGTCAAATTCACAGGGAATTTTGA | 609 | 42.69 | MLGDQGSVHLKIDTPIPHFSNQELKALQVNGHMKSKLDPLGLEERKIPDELDLAHNGFSEADLDRDFFWGVWKMSGFLSESRPTQTLRSVLIRLEHVYTIDTQYCPLDHVINSSLSSLAFLDLSIFDQFLIRGESKWLRQTGLVVMARLERFLQKSDDNPLLTPEMDPTLRKQIQECNWQVVNASTSVNYFDVLRRQIHREF | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19903662 | 19905473 | - | CmoCh04G027490.1 | Cmo04g02749 | 381724 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g02749 | 202 | Gene3D | TPP helical domain | 21 | 99 | - | - | |
| Cmo04g02749 | 202 | PANTHER | 2-OXOGLUTARATE DEHYDROGENASE | 124 | 202 | IPR011603 | GO:0004591|GO:0006099|GO:0030976 | |
| Cmo04g02749 | 202 | PANTHER | 2-OXOGLUTARATE DEHYDROGENASE, E1 COMPONENT | 25 | 101 | - | - | |
| Cmo04g02749 | 202 | PANTHER | 2-OXOGLUTARATE DEHYDROGENASE | 25 | 101 | IPR011603 | GO:0004591|GO:0006099|GO:0030976 | |
| Cmo04g02749 | 202 | Gene3D | - | 122 | 202 | - | - | |
| Cmo04g02749 | 202 | PANTHER | 2-OXOGLUTARATE DEHYDROGENASE, E1 COMPONENT | 124 | 202 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g00226 | Cmo04g02749 | CCT | |
| Cmo04g01270 | Cmo04g02749 | CCT | |
| Cmo04g02749 | Cmo15g00423 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02749 | Cmo-Chr4:19903662 | Cmo04g01270 | Cmo-Chr4:6434871 | 3.45E-31 | dispersed | |
| Cmo15g00423 | Cmo-Chr15:1906659 | Cmo04g02749 | Cmo-Chr4:19903662 | 1.03E-34 | wgd | |
| Cmo04g00226 | Cmo-Chr4:1127045 | Cmo04g02749 | Cmo-Chr4:19903662 | 2.94E-29 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g02749 | K00164 | - | psom:113322874 | 129.413 |