Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02760 ATGGCGGGAAAGGGCGAGGGTCCGGCCATCGGTATCGATCTCGGTACTACTTATTCCTGTGTTGGAGTTTGGCAGCACGATCGTGTTGAGATTATCGCCAATGATCAGGGGAATCGGACAACGCCGTCGTATGTTGCTTTCACTGATAGCGAGCGGCTTATCGGCGATGCTGCGAAGAACCAGGTTGCCATGAATCCTCTCAACACCGTCTTCGATGCGAAGCGGTTGATTGGAAGGAGATTCACCGATCCCACGGTCCAGAACGATATGAAAATGTGGCCGTTCAAGGTCATCGCCGGTCCAGGTGACAAACCCATGATTGTTGTCAACTACAAAGGCGAAGAGAAGCAGTTCGCTGCTGAGGAAATTTCATCCATGGTCCTCACGAAAATGCGTGAGATAGCAGAAGCTTACCTCGGTTCCTCCGTGAAGAACGCTGTCGTTACTGTCCCTGCTTATTTCAATGACTCTCAGCGTCAGGCCACCAAAGACGCAGGTGTCATTGCCGGCCTCAATGTTATGAGGATCATCAATGAGCCCACTGCGGCAGCCATCGCTTATGGACTAGACAAGAAAGCATCCAGTGTTGGCGAGAAGAATGTACTCATATTTGATTTAGGTGGAGGAACATTTGATGTCTCTCTTCTCACAATTGAGGAGGGTATTTTTGAAGTGAAGGCGACTGCCGGTGACACCCATCTCGGAGGTGAGGACTTCGACAACAGATTGGTTAACCATTTCGTACAGGAATTCAAGAGGAAGCATAAGAAGGACATCAGTGGAAATCCAAGGGCTCTGAGGAGATTGAGGACTGCTTGTGAAAGGGCGAAGAGAACCCTTTCATCCACTGCTCAAACTACAATTGAGATTGATTCTTTGTATGAAGGAATTGATTTCTACACAACCATCACTCGTGCTAGATTCGAGGAGCTCAACATGGACCTGTTCCGAAAGTGCATGGAGCCAGTTGAGAAGTGTCTGAGAGATGCAAAGATGGACAAAAGCAGCGTCCATGATGTTGTCCTTGTTGGTGGCTCTACGAGGATTCCTAAGGTGCAGCAGCTACTGCAGGATTTCTTCAATGGCAAGGAGCTCTGCAAGAGTATCAATCCTGACGAGGCAGTTGCTTATGGGGCTGCTGTTCAAGCTGCTATCTTGAGTGGTGAGGGAAATGAGAAAGTGCAGGATCTTCTTCTTTTGGATGTCACTCCTCTGTCTCTTGGCTTGGAGACTGCTGGAGGTGTGATGACAGTTTTGATCCCAAGGAACACCACCATACCCACAAAGAAGGAGCAAGTATTTTCCACATACTCAGACAACCAGCCTGGTGTTCTTATTCAGGTCTATGAGGGCGAGAGGACAAGAACCAGAGATAACAACTTGCTGGGCAAGTTTGAACTTTCCGGCATTCCTCCAGCTCCAAGAGGTGTTCCTCAGATCACTGTTTGCTTCGACATCGACGCCAACGGTATTCTAAACGTTTCCGCTGAGGATAAAACAACTGGACAGAAGAACAAGATCACCATTACCAACGACAAAGGAAGGTTGTCCAAAGAGGAGATTGAAAAACTGGTTCAAGAAGCAGAGAAGTTCAAGGCTGAAGATGAGGAACACAAGAAGAAAGTTGAATCAAAGAATGCTTTAGAGAACTATGCATACAATATGAGGAACACAATCAGAGATGAAAAGATAGGTGGTAAACTTGCCCCAGCAGACAAGAAGAAGATTGAAGATGCAGTTGAACAGGCCATTCAATGGCTAGACGGCAACCAGCTTGCAGAGTCCGACGAATTTGAGGACAAAATGAAAGAACTCGAATCTATTTGCAACCCCATCATAGCCAAGATGTATCAAGGTGGGGCTGACATGGGCGGCGTCGCAATGGACGATGATACTCCTCCATCAGGCGGCAGTGGCGCTGGTCCTAAGATCGAGGAAGTTGATTAA 1947 47.71 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFTDPTVQNDMKMWPFKVIAGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGSSVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEEHKKKVESKNALENYAYNMRNTIRDEKIGGKLAPADKKKIEDAVEQAIQWLDGNQLAESDEFEDKMKELESICNPIIAKMYQGGADMGGVAMDDDTPPSGGSGAGPKIEEVD 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19963206 19966159 - CmoCh04G027600.1 Cmo04g02760 381735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02760 648 MobiDBLite consensus disorder prediction 624 648 - -
Cmo04g02760 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cmo04g02760 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Cmo04g02760 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Cmo04g02760 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Cmo04g02760 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Cmo04g02760 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Cmo04g02760 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Cmo04g02760 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Cmo04g02760 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Cmo04g02760 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Cmo04g02760 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Cmo04g02760 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Cmo04g02760 648 Gene3D - 546 619 IPR029048 -
Cmo04g02760 648 Gene3D - 71 126 - -
Cmo04g02760 648 Gene3D - 10 384 - -
Cmo04g02760 648 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Cmo04g02760 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Cmo04g02760 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Cmo04g02760 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cmo04g02760 648 Coils Coil 514 541 - -
Cmo04g02760 648 Gene3D - 192 366 - -
Cmo04g02760 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cmo04g02760 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cmo04g02760 648 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 628 - -
Cmo04g02760 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cmo04g02760 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Cmo04g02760 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 623 IPR029048 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00923 Cmo-Chr2:5674154 Cmo04g02760 Cmo-Chr4:19963206 0 dispersed
Cmo03g00444 Cmo-Chr3:5028811 Cmo04g02760 Cmo-Chr4:19963206 0 dispersed
Cmo04g02760 Cmo-Chr4:19963206 Cmo15g00410 Cmo-Chr15:1867166 0 dispersed
Cmo14g01744 Cmo-Chr14:13583561 Cmo04g02760 Cmo-Chr4:19963206 5.88E-90 dispersed
Cmo16g00305 Cmo-Chr16:1399820 Cmo04g02760 Cmo-Chr4:19963206 0 dispersed
Cmo04g02755 Cmo-Chr4:19938575 Cmo04g02760 Cmo-Chr4:19963206 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02760 K03283 - csv:101211905 1246.11