Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02761 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCACCTCCAAGGAAGTGGCTGTGAGACTAATAACGGCCAACACCTTCCACCGACGCCACCACCAGCTGCAGCTGGCGGTGGTGGGGGTGGAGGTGGAGGTGGTGTACCTAGCTCGATCCGACCTGGGTCGATGACGGATCGAGCTAGGATGGCAAAGATACCGCAACCGGAAGCAGGGTTAAAATGCCCTAGATGTGAGTCAACCAACACGAAGTTTTGTTACTTCAACAACTATAGCCTCACTCAGCCGCGCCATTTTTGCAAGACCTGTCGTCGATACTGGACGAGAGGTGGGGCGATGAGGAATGTACCGGTTGGGGGCGGATGTCGACGGTCGAGTAAGAGAAGCAGCAAAGGAGGGAGTAACCGGTCGAAATCTCCAGCGGGTTCGAGTACTTCAACGAGCACGGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCATCAATTGGGTCCTCCTCCGCCAACCCATTTCCCCTTCTTGGCTCCAAATTTACACAATCTTAGTGATTTTGGGAACATTGGGTTAAACTTTGAAGGCCTTCAAATCCCCAATTCATCAGGAGGAGAATCAACAATTTTATCAAGTGGAATCACGGATCATACCCAATGGAAAATACCCTTTTTTGCAAATCTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCATCATCATCATCTGCATCATCAACAACCAGCTGATATCTCAAAGCCATTACTGGACAATGGGTTTAGTACCACAACTCATCTGTTGGGTACCACTAATAGCAGCATGAAACTCATGGAGGATACTCAAGGTATTAACAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAATTACAAGCACAACACCTGGGAACATTGCTTGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACCCATCTCTTATGA 1029 45.77 MVFSSVPVFLDPPNWPSQQPNHLQGSGCETNNGQHLPPTPPPAAAGGGGGGGGGGVPSSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPPPPTHFPFLAPNLHNLSDFGNIGLNFEGLQIPNSSGGESTILSSGITDHTQWKIPFFANLHQQNGMYSNFMAEDHHHHHLHHQQPADISKPLLDNGFSTTTHLLGTTNSSMKLMEDTQGINNLSRNFLGIQPNDQFWNSITSTTPGNIAWTDQISDHFNSTSSTTHLL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19969703 19971137 + CmoCh04G027610.1 Cmo04g02761 381736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02761 342 MobiDBLite consensus disorder prediction 122 160 - -
Cmo04g02761 342 MobiDBLite consensus disorder prediction 11 34 - -
Cmo04g02761 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 318 IPR045174 GO:0003700|GO:0006355
Cmo04g02761 342 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Cmo04g02761 342 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 318 - -
Cmo04g02761 342 MobiDBLite consensus disorder prediction 10 64 - -
Cmo04g02761 342 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677|GO:0006355
Cmo04g02761 342 MobiDBLite consensus disorder prediction 140 160 - -
Cmo04g02761 342 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02761 - - - cmo:103498163 456.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00618 Cmo-Chr1:3189631 Cmo04g02761 Cmo-Chr4:19969703 1.08E-53 dispersed
Cmo02g00815 Cmo-Chr2:4986104 Cmo04g02761 Cmo-Chr4:19969703 9.85E-43 dispersed
Cmo04g00221 Cmo-Chr4:1111117 Cmo04g02761 Cmo-Chr4:19969703 8.48E-51 dispersed
Cmo04g01262 Cmo-Chr4:6404620 Cmo04g02761 Cmo-Chr4:19969703 1.12E-54 dispersed
Cmo04g02761 Cmo-Chr4:19969703 Cmo14g00147 Cmo-Chr14:642536 4.38E-58 dispersed
Cmo15g00409 Cmo-Chr15:1861731 Cmo04g02761 Cmo-Chr4:19969703 7.70E-155 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo04g02761 Cmo-Chr4:19969703 5.82E-47 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo04g02761 Cmo-Chr4:19969703 6.35E-42 wgd
Cmo04g02761 Cmo-Chr4:19969703 Cmo07g01030 Cmo-Chr7:5100192 1.58E-30 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 6.3e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 3.2e-41 165.6
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.6e-40 161.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.6e-40 161.8
Cmo15g01373 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.7e-39 160.2
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 6.1e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.4e-41 166.8
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 5.5e-38 154.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.7e-37 152.5
Cmo04g02761 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 5.1e-40 162.5
Cmo14g00147 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.2e-38 157.1
Cmo06g00304 CCT,CST,ECH 1 127 C2C2-Dof Transcription Factor Family AT2G37590 64.8 4.8e-38 156.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 58.0 4.1e-37 152.9
Cmo13g00132 CCT,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cmo15g01373 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 73.1 1.5e-39 161.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 6.2e-40 162.5
Cmo13g00132 CCT,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cmo15g00409 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.3e-37 154.8
Cmo03g00443 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.4e-36 150.6
Cmo03g00443 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.9e-37 152.5
Cmo13g00132 CCT,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 51.6 2.2e-36 150.6
Cmo11g00231 CCT,CST 26 311 C2C2-Dof Transcription Factor Family AT5G60850 53.2 3.9e-50 196.1
Cmo10g00299 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 1.1e-47 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9735 PF02701 zf-Dof 4.20E-31 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02761 Cmo_Chr04 FPKM 18.230486 18.479725 37.393661 38.780659 15.124901 15.395586 14.481242 3.195886 3.345225 2.924175