Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02761 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCACCTCCAAGGAAGTGGCTGTGAGACTAATAACGGCCAACACCTTCCACCGACGCCACCACCAGCTGCAGCTGGCGGTGGTGGGGGTGGAGGTGGAGGTGGTGTACCTAGCTCGATCCGACCTGGGTCGATGACGGATCGAGCTAGGATGGCAAAGATACCGCAACCGGAAGCAGGGTTAAAATGCCCTAGATGTGAGTCAACCAACACGAAGTTTTGTTACTTCAACAACTATAGCCTCACTCAGCCGCGCCATTTTTGCAAGACCTGTCGTCGATACTGGACGAGAGGTGGGGCGATGAGGAATGTACCGGTTGGGGGCGGATGTCGACGGTCGAGTAAGAGAAGCAGCAAAGGAGGGAGTAACCGGTCGAAATCTCCAGCGGGTTCGAGTACTTCAACGAGCACGGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCATCAATTGGGTCCTCCTCCGCCAACCCATTTCCCCTTCTTGGCTCCAAATTTACACAATCTTAGTGATTTTGGGAACATTGGGTTAAACTTTGAAGGCCTTCAAATCCCCAATTCATCAGGAGGAGAATCAACAATTTTATCAAGTGGAATCACGGATCATACCCAATGGAAAATACCCTTTTTTGCAAATCTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCATCATCATCATCTGCATCATCAACAACCAGCTGATATCTCAAAGCCATTACTGGACAATGGGTTTAGTACCACAACTCATCTGTTGGGTACCACTAATAGCAGCATGAAACTCATGGAGGATACTCAAGGTATTAACAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAATTACAAGCACAACACCTGGGAACATTGCTTGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACCCATCTCTTATGA 1029 45.77 MVFSSVPVFLDPPNWPSQQPNHLQGSGCETNNGQHLPPTPPPAAAGGGGGGGGGGVPSSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPPPPTHFPFLAPNLHNLSDFGNIGLNFEGLQIPNSSGGESTILSSGITDHTQWKIPFFANLHQQNGMYSNFMAEDHHHHHLHHQQPADISKPLLDNGFSTTTHLLGTTNSSMKLMEDTQGINNLSRNFLGIQPNDQFWNSITSTTPGNIAWTDQISDHFNSTSSTTHLL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19969703 19971137 + CmoCh04G027610.1 Cmo04g02761 381736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02761 342 MobiDBLite consensus disorder prediction 122 160 - -
Cmo04g02761 342 MobiDBLite consensus disorder prediction 11 34 - -
Cmo04g02761 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 318 IPR045174 GO:0003700|GO:0006355
Cmo04g02761 342 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Cmo04g02761 342 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 318 - -
Cmo04g02761 342 MobiDBLite consensus disorder prediction 10 64 - -
Cmo04g02761 342 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677|GO:0006355
Cmo04g02761 342 MobiDBLite consensus disorder prediction 140 160 - -
Cmo04g02761 342 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00618 Cmo-Chr1:3189631 Cmo04g02761 Cmo-Chr4:19969703 1.08E-53 dispersed
Cmo02g00815 Cmo-Chr2:4986104 Cmo04g02761 Cmo-Chr4:19969703 9.85E-43 dispersed
Cmo04g00221 Cmo-Chr4:1111117 Cmo04g02761 Cmo-Chr4:19969703 8.48E-51 dispersed
Cmo04g01262 Cmo-Chr4:6404620 Cmo04g02761 Cmo-Chr4:19969703 1.12E-54 dispersed
Cmo04g02761 Cmo-Chr4:19969703 Cmo14g00147 Cmo-Chr14:642536 4.38E-58 dispersed
Cmo15g00409 Cmo-Chr15:1861731 Cmo04g02761 Cmo-Chr4:19969703 7.70E-155 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo04g02761 Cmo-Chr4:19969703 5.82E-47 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo04g02761 Cmo-Chr4:19969703 6.35E-42 wgd
Cmo04g02761 Cmo-Chr4:19969703 Cmo07g01030 Cmo-Chr7:5100192 1.58E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9735 PF02701 zf-Dof 4.20E-31 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02761 - - cmo:103498163 456.062