Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02766 ATGAAGGTCTCGGTAGTTTCTCGCAGTGGGAGAGAAGTTGTTGACGGCGGCATTCAACTAAGCGATTCTGCTTCGGTGGCGGATCTGCAGGATGCGATTTACAAGCGAACCAAAAAGTTCTACCCTGCTAGGCAGCGGTTAACTCTTCCAGTTCAACCTGGTTCAAAGGAGAGGCCTACCGTTCTTAACTACAAGAAAAGCCTCAAAGAGTATTGTAGCAACAACTCAGACAACATAACTGTTGTCTTCAAGGACTTGGGTCCACAAGTTTCTTATCGTACTCTCTTCTTTTTTGAATACTTGGGCCCCTTGATCCTCTACCCCATCTTTTACTACTTCCCTGTCTATCAGTTCTTCGGCTACAAGGCCGAACGTGTCATCCATCCGGTTCAGACGTATGCAATGTACTACTGGTGTTTTCACTACTTCAAACGAATCATGGAAACATTTTTCGTGCATAGGTTCAGCCACGCGACCTCACCGCTTTCAAATGTGTTTCGAAACTGCGCTTACTACTGGTCTTTTGGTTCGTATATTGCATATTATGTTAATCACCCACTTTATAGCCCTGTTGGTGACTTTCAAATGAAGATTGGGTTTGCATTTGGTTTGCTGTGTCAAGTGTGTAACTTCTACTGTCATATCTTGCTGAGAAAACTGCGGAGCCCTGAGGGGAATGGGGGATATCAAATCCCAAAGGGGTTTCTGTTCAACATTGTGACATGTGCAAACTACACAACAGAAATATATCAGTGGGTAGGCTTCAATATAGCTACACAGACTGTTGCTGGTTACATCTTTCTTGTGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTTTTCCCTAGCATTGTCGGCCGACCTCGTCACACCGGTGTGATGGTCGGCATGGGCCAGAAAGATGCTTATGTAGGTGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTTAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACGTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCATCCTGTTCTCCTAACTGAGGCCCCTCTTAACCCCAAAGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAAACCTTTAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTATATGCCAGTGGTCGAACAACTGGAATTGTGATGGATTCTGGTGATGGTGTGAGTCATACAGTCCCCATTTATGAGGGGTATGCTCTCCCACATGCCATTCTTCGACTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACGGAGCGTGGATACTCATTCACAACCACAGCAGAGCGAGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCACTTGACTATGAGCAGGAACTTGAAACTTCTAAGACCAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACGATCGGTGCCGAACGTTTTAGATGCCCGGAAGTTCTCTTCCAGCCATCCATGATCGGAATGGAAGCTGCGGGCATTCATGAAACTACATATAATTCCATCATGAAGTGCGACGTGGATATTAGGAAGGATCTGTATGGTAACATCGTCCTCTCCGGTGGTTCAACCATGTTTACGGGCATTGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCGCCGAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAAAGAAAGTACAGTGTTTGGATTGGTGGCTCCATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAGTCTGGGCCATCGATTGTGCACAGGAAGTGCTTCTAA 1881 45.77 MKVSVVSRSGREVVDGGIQLSDSASVADLQDAIYKRTKKFYPARQRLTLPVQPGSKERPTVLNYKKSLKEYCSNNSDNITVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKAERVIHPVQTYAMYYWCFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWSFGSYIAYYVNHPLYSPVGDFQMKIGFAFGLLCQVCNFYCHILLRKLRSPEGNGGYQIPKGFLFNIVTCANYTTEIYQWVGFNIATQTVAGYIFLVAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19981604 19987439 + CmoCh04G027660.1 Cmo04g02766 381741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02766 626 PANTHER ACTIN-97 267 625 - -
Cmo04g02766 626 Pfam Actin 264 626 IPR004000 -
Cmo04g02766 626 Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase 159 269 IPR001104 GO:0006629|GO:0016627
Cmo04g02766 626 PANTHER ACTIN 267 625 IPR004000 -
Cmo04g02766 626 PRINTS Actin signature 277 286 IPR004000 -
Cmo04g02766 626 PRINTS Actin signature 366 379 IPR004000 -
Cmo04g02766 626 PRINTS Actin signature 391 410 IPR004000 -
Cmo04g02766 626 PRINTS Actin signature 300 311 IPR004000 -
Cmo04g02766 626 PRINTS Actin signature 312 334 IPR004000 -
Cmo04g02766 626 PRINTS Actin signature 487 503 IPR004000 -
Cmo04g02766 626 SUPERFAMILY Actin-like ATPase domain 398 626 IPR043129 -
Cmo04g02766 626 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 199 269 IPR001104 GO:0006629|GO:0016627
Cmo04g02766 626 ProSitePatterns Actins signature 1. 304 314 IPR004001 -
Cmo04g02766 626 Gene3D - 389 589 - -
Cmo04g02766 626 CDD Ubl_TECR_like 2 86 - -
Cmo04g02766 626 Gene3D Actin; Chain A, domain 4 431 522 - -
Cmo04g02766 626 ProSitePatterns Actins and actin-related proteins signature. 355 367 IPR020902 -
Cmo04g02766 626 SUPERFAMILY Actin-like ATPase domain 264 403 IPR043129 -
Cmo04g02766 626 SMART actin_3 259 626 IPR004000 -
Cmo04g02766 626 CDD NBD_sugar-kinase_HSP70_actin 325 432 - -
Cmo04g02766 626 Gene3D - 267 620 - -
Cmo04g02766 626 ProSitePatterns Actins signature 2. 607 615 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02766 Cmo-Chr4:19981604 Cmo06g00095 Cmo-Chr6:553644 0 dispersed
Cmo15g00398 Cmo-Chr15:1829212 Cmo04g02766 Cmo-Chr4:19981604 0 dispersed
Cmo18g00966 Cmo-Chr18:10720065 Cmo04g02766 Cmo-Chr4:19981604 1.10E-13 dispersed
Cmo15g00397 Cmo-Chr15:1826838 Cmo04g02766 Cmo-Chr4:19981604 0 wgd
Cmo20g00447 Cmo-Chr20:2077075 Cmo04g02766 Cmo-Chr4:19981604 0 wgd
Cmo04g00222 Cmo-Chr4:1113504 Cmo04g02766 Cmo-Chr4:19981604 0 wgd
Cmo04g01263 Cmo-Chr4:6409646 Cmo04g02766 Cmo-Chr4:19981604 0 wgd
Cmo04g02766 Cmo-Chr4:19981604 Cmo07g01037 Cmo-Chr7:5240682 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02766 K10355 - csv:101220611 705.286