Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02778 ATGTCGTTGGCCGTGGAATGCAGAGAACATAAGGGAGTTTACGGCGGCGGCCCTTGGCAGAGCGCCCACGCCACATTCTACGGCGGCAATGACGCCTCCGGCACTATGGGGGGGGCGTGTGGTTACGGCAACTTATACAGCCAGGGGTACGGCGTGAACACGGCAGCATTGAGCACAGCTCTGTTCAACGACGGGTCCAGCTGTGGAGCTTGTTTCGAAATCAAGTGCGTGAATGACCCACAATGGTGCCACGCTGGAAACCCCTCGATTTTCGTGACAGCCACCAACTTTTGTCCTCCCAATTATGCACTCCCTAATGACAACGGCGGGTGGTGCAATCCTCCTCGCCCTCACTTCGACCTGTCCATGCCCATGTTCCTCAAAATCGCCCAATACCGCGCCGGGATCGTCCCCGTCTCGTTTCGCAGGGTGGGATGCAGGAGGGAGGGAGGGATAAGGTTTACGATGAATGGGTTCAAATATTTCAATCTGGTACTGATAACCAACGTGGCAGGCGCTGGGGACATTGTGAGTGTGCGCATCAAGGGGTCGAAGACAGGGTGGATGAGCATGACACGTAATTGGGGTCAAAACTGGCAGTCAAACGACGTCTTAGTGGGTCAATCACTGTCGTTAAGTGTTAAAGGCAGCGATGGAAGGTATCTCTCGACTCTTTCCCCCGCGCTATCGGTACCCCTCGATTTCTCTCTTTCACAGCTATCCCCTCGATTTCTCCCTCGCCGGCGGCAACCGTCAATCGTGGGGGACGGCTTTTGTATCCTTGATTTGGTACAAGGGCTGTTAAAAGCTCATAGCACAGGATACAAAAAACCTGACACCAACACACCCTTCAAGAATACAAGCAGTTTTATTGATTTTGACTCTGAATTCATGGAGGAGCAATTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTGAATGAAAATGCTTCTTCATCTGAAGATCCTTCATTGGATTTGTCTTTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGACGACCATTTTCCAGCATCACTTCTGGATCTCCCTTGTGTAGTGGAATCATATAAAACATACGATGATACTGTGCTAATCAAAGCTGCAGACATTGCCCAGATGATTATGGTCAGAGATCCAGGCGACCCTGCGCCAGATTCAACCGAGTATAGACATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACGTAGATTTCGAAGAGAGCCGGATTTAAATCCTGAGCTTGTACGACGTGTGGAGAAAGATTTACTAAACATCATGGCAGGAGGAACTACCGAAAATGCAGATGTTGGAGTGGCTGAACATCAAGATGATAGACACGAGAATTCTCATCATGCAAGTGCAAAGCCTGCATCCACCCCTGCAGCGAAGCCTGATGTGATGGAAACTGAGACAACTGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGATTAG 1497 50.17 MSLAVECREHKGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVGCRREGGIRFTMNGFKYFNLVLITNVAGAGDIVSVRIKGSKTGWMSMTRNWGQNWQSNDVLVGQSLSLSVKGSDGRYLSTLSPALSVPLDFSLSQLSPRFLPRRRQPSIVGDGFCILDLVQGLLKAHSTGYKKPDTNTPFKNTSSFIDFDSEFMEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKAADIAQMIMVRDPGDPAPDSTEYRHGLTPPMRDARKRRFRREPDLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDRHENSHHASAKPASTPAAKPDVMETETTVGEPERSDSDDSDHSID 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20041108 20045547 - CmoCh04G027780.1 Cmo04g02778 381753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02778 498 Pfam Lytic transglycolase 54 141 IPR009009 -
Cmo04g02778 498 MobiDBLite consensus disorder prediction 479 498 - -
Cmo04g02778 498 Pfam TAFII55 protein conserved region 298 433 IPR006751 GO:0005669|GO:0006367
Cmo04g02778 498 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Cmo04g02778 498 PRINTS Expansin signature 90 100 IPR002963 GO:0009664
Cmo04g02778 498 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Cmo04g02778 498 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Cmo04g02778 498 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Cmo04g02778 498 PRINTS Expansin signature 49 63 IPR002963 GO:0009664
Cmo04g02778 498 PRINTS Expansin signature 76 87 IPR002963 GO:0009664
Cmo04g02778 498 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Cmo04g02778 498 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 37 151 IPR007112 -
Cmo04g02778 498 MobiDBLite consensus disorder prediction 448 498 - -
Cmo04g02778 498 PANTHER EXPANSIN-A6 12 223 - -
Cmo04g02778 498 SUPERFAMILY Barwin-like endoglucanases 18 169 IPR036908 -
Cmo04g02778 498 CDD TAF7 299 444 IPR006751 GO:0005669|GO:0006367
Cmo04g02778 498 Gene3D - 4 147 IPR036908 -
Cmo04g02778 498 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Cmo04g02778 498 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Cmo04g02778 498 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Cmo04g02778 498 PRINTS Expansin/Lol pI family signature 18 33 IPR007118 GO:0005576
Cmo04g02778 498 PRINTS Expansin/Lol pI family signature 36 54 IPR007118 GO:0005576
Cmo04g02778 498 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 222 IPR007117 -
Cmo04g02778 498 SMART dpbb_1 54 141 IPR007112 -
Cmo04g02778 498 SUPERFAMILY PHL pollen allergen 148 224 IPR036749 -
Cmo04g02778 498 SMART TAFII55_N_2 298 442 IPR006751 GO:0005669|GO:0006367
Cmo04g02778 498 Gene3D - 151 237 IPR036749 -
Cmo04g02778 498 Pfam Expansin C-terminal domain 152 222 IPR007117 -
Cmo04g02778 498 PANTHER EXPANSIN-A15 12 223 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01251 Cmo04g02778 CCT
Cmo04g02778 Cmo04g01251 ECH
Cmo04g01251 Cmo04g02778 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00797 Cmo-Chr2:4921039 Cmo04g02778 Cmo-Chr4:20041108 1.12E-134 dispersed
Cmo04g02778 Cmo-Chr4:20041108 Cmo13g00120 Cmo-Chr13:694183 2.43E-122 dispersed
Cmo20g00433 Cmo-Chr20:2031500 Cmo04g02778 Cmo-Chr4:20041108 1.01E-136 wgd
Cmo03g00435 Cmo-Chr3:4977128 Cmo04g02778 Cmo-Chr4:20041108 2.42E-132 wgd
Cmo04g00211 Cmo-Chr4:1056541 Cmo04g02778 Cmo-Chr4:20041108 2.87E-88 wgd
Cmo04g01251 Cmo-Chr4:6347642 Cmo04g02778 Cmo-Chr4:20041108 1.46E-121 wgd
Cmo04g02778 Cmo-Chr4:20041108 Cmo07g01042 Cmo-Chr7:5279087 6.76E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02778 - - csv:101216168 409.068