Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02791 ATGGCGGCTTCCTTTTTCTTTTTGCTTCTCTTACCACTCTCTTTCTTCTTCACTGATTCCTCCTTGGCTTCTGTTCAAGATCCTCATCTTGTCGTTCAAGAAGTTCAAAGGAGCATCAATGAATCGAGGACAAGAAGAAACTTGGGATATTTGTCATGTAGAACAGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGAAAGCGCTTAGCCGACTGCGCCATTGGGTTTGGCAAAAACGCCATCGGCGGCAGAAACGGCCGCTTCTACGTCGTCACAGACGCCGGCGACGACGACCCTCTCAACCCCAGACCAGGAACCCTCCGCCACGCCGTCATCCAAAACGAGCCCTTATGGATCATCTTCAAGCGTGACATGGTAATCCAACTCAGACAAGAACTAGTGATGAACTCGTTCAAGACCATCGACGGGCGTGGGGCCAGCGTGCATGTGGCAGGTGGGCCATGCATCACCATCCACTACGCCACAAACATCATAATCCACGGCATCCACATACATGACTGTAAGAGAGGGGGCAATGGTAACATACGGGACTCCCCACAGCACTCCGGGTGGTGGACTATATCGGACGGTGATGGAGTGTCGATCTTTGGTGGCAAGAATATTTGGGTTGACCATTGTTCTTTGTCTAACTGTAATGATGGGTTGATCGACGCGATTCATGGTTCGACGGCGATCACGATTTCGAATAATTACATGACTCATCATGATAAAGTGATGCTGTTGGGACATAGTGACTCTTACACTCAAGACAAGAATATGCAAGTTACTATTGCCTTCAACCATTTTGGTGAGGGCCTTGTTCAACGAATGCCCAGATGCAGGCATGGGTATTTCCATGTGGTGAACAACGATTACACCCACTGGGAAATGTACGCAATTGGAGGGAGTGCTTCACCGACTATATACAGTCAAGGCAACAGATTTTTGGCGCCGGACGTCCGATACCGAAAGGAGGTGACAAAGCACGAGGACGCGCCGGAGAGTGAGTGGCGTCACTGGAACTGGCGGTCAGAGGGCGACATGATGTTGAACGGCGCCTATTTTCGCCAGTCCGGCGCCGGCGCTGCGTCCAGCTACGCAAGAGCTTACAGTCTGAGCGCTAGACCCTCCTCCCTCGTTGGTTCTATCACGGTCACAGCCGGCGCCCTCAACTGCCGCAGAGGCTCCCGTTGCTAG 1218 51.89 MAASFFFLLLLPLSFFFTDSSLASVQDPHLVVQEVQRSINESRTRRNLGYLSCRTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYVVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLRQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTISDGDGVSIFGGKNIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDVRYRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRRGSRC 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20087052 20090039 - CmoCh04G027910.1 Cmo04g02791 381766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02791 405 SMART amb_all 131 328 IPR002022 -
Cmo04g02791 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Cmo04g02791 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Cmo04g02791 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Cmo04g02791 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Cmo04g02791 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Cmo04g02791 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Cmo04g02791 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Cmo04g02791 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Cmo04g02791 405 Pfam Pectate lyase 137 322 IPR002022 -
Cmo04g02791 405 PANTHER PECTATE LYASE 3 402 - -
Cmo04g02791 405 Gene3D - 56 398 IPR012334 -
Cmo04g02791 405 PANTHER PECTATE LYASE 18-RELATED 3 402 IPR045032 GO:0030570
Cmo04g02791 405 SUPERFAMILY Pectin lyase-like 32 400 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02791 Cmo-Chr4:20087052 Cmo13g00799 Cmo-Chr13:7568287 0 dispersed
Cmo04g02791 Cmo-Chr4:20087052 Cmo18g00180 Cmo-Chr18:1237313 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02791 K01728 - csv:101217834 740.339