Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02791 | ATGGCGGCTTCCTTTTTCTTTTTGCTTCTCTTACCACTCTCTTTCTTCTTCACTGATTCCTCCTTGGCTTCTGTTCAAGATCCTCATCTTGTCGTTCAAGAAGTTCAAAGGAGCATCAATGAATCGAGGACAAGAAGAAACTTGGGATATTTGTCATGTAGAACAGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGAAAGCGCTTAGCCGACTGCGCCATTGGGTTTGGCAAAAACGCCATCGGCGGCAGAAACGGCCGCTTCTACGTCGTCACAGACGCCGGCGACGACGACCCTCTCAACCCCAGACCAGGAACCCTCCGCCACGCCGTCATCCAAAACGAGCCCTTATGGATCATCTTCAAGCGTGACATGGTAATCCAACTCAGACAAGAACTAGTGATGAACTCGTTCAAGACCATCGACGGGCGTGGGGCCAGCGTGCATGTGGCAGGTGGGCCATGCATCACCATCCACTACGCCACAAACATCATAATCCACGGCATCCACATACATGACTGTAAGAGAGGGGGCAATGGTAACATACGGGACTCCCCACAGCACTCCGGGTGGTGGACTATATCGGACGGTGATGGAGTGTCGATCTTTGGTGGCAAGAATATTTGGGTTGACCATTGTTCTTTGTCTAACTGTAATGATGGGTTGATCGACGCGATTCATGGTTCGACGGCGATCACGATTTCGAATAATTACATGACTCATCATGATAAAGTGATGCTGTTGGGACATAGTGACTCTTACACTCAAGACAAGAATATGCAAGTTACTATTGCCTTCAACCATTTTGGTGAGGGCCTTGTTCAACGAATGCCCAGATGCAGGCATGGGTATTTCCATGTGGTGAACAACGATTACACCCACTGGGAAATGTACGCAATTGGAGGGAGTGCTTCACCGACTATATACAGTCAAGGCAACAGATTTTTGGCGCCGGACGTCCGATACCGAAAGGAGGTGACAAAGCACGAGGACGCGCCGGAGAGTGAGTGGCGTCACTGGAACTGGCGGTCAGAGGGCGACATGATGTTGAACGGCGCCTATTTTCGCCAGTCCGGCGCCGGCGCTGCGTCCAGCTACGCAAGAGCTTACAGTCTGAGCGCTAGACCCTCCTCCCTCGTTGGTTCTATCACGGTCACAGCCGGCGCCCTCAACTGCCGCAGAGGCTCCCGTTGCTAG | 1218 | 51.89 | MAASFFFLLLLPLSFFFTDSSLASVQDPHLVVQEVQRSINESRTRRNLGYLSCRTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYVVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLRQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTISDGDGVSIFGGKNIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDVRYRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRRGSRC | 405 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 20087052 | 20090039 | - | CmoCh04G027910.1 | Cmo04g02791 | 381766 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02791 | 405 | SMART | amb_all | 131 | 328 | IPR002022 | - | |
Cmo04g02791 | 405 | PRINTS | Pollen allergen Amb family signature | 79 | 96 | IPR018082 | - | |
Cmo04g02791 | 405 | PRINTS | Pollen allergen Amb family signature | 103 | 128 | IPR018082 | - | |
Cmo04g02791 | 405 | PRINTS | Pollen allergen Amb family signature | 305 | 324 | IPR018082 | - | |
Cmo04g02791 | 405 | PRINTS | Pollen allergen Amb family signature | 347 | 371 | IPR018082 | - | |
Cmo04g02791 | 405 | PRINTS | Pollen allergen Amb family signature | 203 | 224 | IPR018082 | - | |
Cmo04g02791 | 405 | PRINTS | Pollen allergen Amb family signature | 376 | 399 | IPR018082 | - | |
Cmo04g02791 | 405 | PRINTS | Pollen allergen Amb family signature | 139 | 155 | IPR018082 | - | |
Cmo04g02791 | 405 | PRINTS | Pollen allergen Amb family signature | 283 | 302 | IPR018082 | - | |
Cmo04g02791 | 405 | Pfam | Pectate lyase | 137 | 322 | IPR002022 | - | |
Cmo04g02791 | 405 | PANTHER | PECTATE LYASE | 3 | 402 | - | - | |
Cmo04g02791 | 405 | Gene3D | - | 56 | 398 | IPR012334 | - | |
Cmo04g02791 | 405 | PANTHER | PECTATE LYASE 18-RELATED | 3 | 402 | IPR045032 | GO:0030570 | |
Cmo04g02791 | 405 | SUPERFAMILY | Pectin lyase-like | 32 | 400 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02791 | Cmo-Chr4:20087052 | Cmo13g00799 | Cmo-Chr13:7568287 | 0 | dispersed | |
Cmo04g02791 | Cmo-Chr4:20087052 | Cmo18g00180 | Cmo-Chr18:1237313 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02791 | K01728 | - | csv:101217834 | 740.339 |