Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02798 | ATGGAAGCTCCTGCAAGTTTCAGCCCTCTTACTATTGCTTTGAGCTTAGCCATGGCAGCAGTCATCCTCTGTCAGTTGCTGCTGAAACTCTTTGCAGCTGCAACGCCAAGCCCTAGCTTGCCTCCTGGCTGCATGGGCTTCCCCTTCGTTGGAGAGACTCTCAGCTTTCTCAAGCCCCATCATTCTAACTCCATTGGGACCTTCCTCCAGCGTCACTGTTCCAGGTTTGGGAAGGTTTTCAAGTCTCATCTATTTGGTTCGTGGGCGATAGTGTCATGTGATCGAGAGCTTAACATGTTCATTCTTCAAAACGACGACAAACTTTTCAAAGTGAGTTATCCCAAGGCCATGCATGGCATTCTCGGCAGCAATTCTTTGATCATCGCCGCCGGAGACACCCACCGGAAGCTCAGAAACGTCGTCGTTAGCTTTGTCAGCTGGTGCAAGTCCAACCCCACTTTCCTTCACTGTGTGGACAAGCTCTCTGTCTCCTTAATGGACTCGTGGAGATCCCAAACTCGTGTGCTTTTCTGCAAAGAAGTGAAAATGTTTGCTTTGAGTGTTATGGTGAAAGAATTGTTGGGCATTGAAGCGAACGAGTCGATTGGGTCGAGAATATTGGACGAGTTCGAAACTTATATGAAAGGCTTTGTTTCTTTACCTCTGAATCTCCTCGGAACTCCATACTATAAGGCTGTTAAGGCCCGAGCGAAGCTTTCGGGCATCGTGAAAGAGATGATGAGAGAGAGGAAAAAGAAGGGATTAGTGGTAGGGGTGGAAAAGGAAGGGGATGATCATGAGAACTTTCTAGACGTGATAATGTCAAATTGGAAGCTTGATGAGGAAGAGACTGTGAGCGTTGTGTTGGACATATTGCTTGGAGGATATGAGACAACAGCTACTCTTATGGGATTGATTGTCTACTTTCTTGCACATTCACCTCCCCATGTTCTTGCAAAGTTAAAGGAAGAACACGAAGGAATAAGAAATGGTAAAGGGAAGGGAGAGTATCTGAATTTAGAAGATTACAAGCAAATGGAGTTCACATGCAATGTGATATATGAAGCCATGAGATGTGGAAATGTGGTCAAATTCTTACATAGAGAAGCCATTAAAGATGTCAAATTCAAAGACATTTTCATTCCTTCGGGATGGAAAGTTCATCCAGTCTTCTCAGCCATTCATCTGGATCCAACCCTTCACCCATATCCTCAACAGTTCAATCCATGGAGATGGAGGGATGATAAAGAAATGAGCAAGAAGGTGACGCCCTTTGGTGGAGGCCCAAGGCTCTGTCCTGGGATTGAGCTTGCCAAGCTAGAGATAGCTTTCTTCCTCCATCATCTTGTCCTGAATTATAGGTGGAAGACTAGCGCAGATGAATGTCCACTGGCTTACCCATATTTTCATCGGAATCAACTCAATCTCCGTTGTTCGTTTGTTCATCCGATACAGTTGCAGAGCTTGTTTCGTCTCTTCATTCGCGCTGCTCACTGTCGACCATTGTTTCTGTCCCTCGCACGCGTAACAGCTAGGATGCCCAAGGAGGAGAGCTTTGAAGTTGGTTTAACAACTGATTGTAGCCCGGAATCTAGTAAGAAATTAAAAGGAAGTAAAAAGAAGAAGAAGCAGTTATTGGTGGAAGGTGTAGATGTCATGGAAAGGAATGTGGAAGGATCTTTTGAGCTGTGGGAAAGCAACATAAACTCTGAAGTGAAAAATAAGAAAAAGAGAAAGAAGAGTACTATACAATGTGTAGTGGAGAACTCTATCCAGGCTGAGGCAGGAGAATATGAAATTAAAGCAGAGAGATCTGTGAAAGAGGGGAGTCCTTTGTCTGATGGTGGAAGTGAGAAAAATGAAATTCTTGAGGAGAGGCAATTTGCATTGGAAAATGATGAGAATGAAAGGGCAGACAGCATAGTTAGAGAAACATCTGGAGAGAAGATTTTAGAGTCTAACAATGGTAAAACAGATCAAAGGAATATAAAGAGGAAGAAACGACTCTTAAAGGAAGTTGCAAATGCGGACATGCGTGGAATTTGTTACTTGAGCCGTGTTCCTCCACATATGGATCCTTTGAAACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAAAGAATTTATCTTGCACCCGAGGACGCTGCAAATCAAGTAAAACGAAAGCGTGCAGGAGGGTTTCGAGGACAATTTTTTTCAGAAGGATGGGTTGAATTTACTGATAAAAGAGTTGCCAAGAAGGTGGCTAATATGTTAAATGGCGAACAAATAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAATATCAAATATTTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAAATGGCTTTAGAAATTTCTGCCGCTAAGAGGGAGAGGGATTTCTATCTTTCTAAAGTTGATAAATCTCGAGCATTGAAATCCATTGAAGAACGGCTAAAGAAGAAGCAGAAGTTGCGAGAAGATTCAGAAATGAATTCTGAACTTGCTGATAGCCAGAAACTCCCAAAACTGATCCGCAACTTCCCACAAACACAACCAGTTGCAGATTCTGCAGTACAAGACAAACCAAAACTATCTACAAATTTCCTTGCTGGGGTGTTTGGAGGTTCCTAG | 2667 | 43.23 | MEAPASFSPLTIALSLAMAAVILCQLLLKLFAAATPSPSLPPGCMGFPFVGETLSFLKPHHSNSIGTFLQRHCSRFGKVFKSHLFGSWAIVSCDRELNMFILQNDDKLFKVSYPKAMHGILGSNSLIIAAGDTHRKLRNVVVSFVSWCKSNPTFLHCVDKLSVSLMDSWRSQTRVLFCKEVKMFALSVMVKELLGIEANESIGSRILDEFETYMKGFVSLPLNLLGTPYYKAVKARAKLSGIVKEMMRERKKKGLVVGVEKEGDDHENFLDVIMSNWKLDEEETVSVVLDILLGGYETTATLMGLIVYFLAHSPPHVLAKLKEEHEGIRNGKGKGEYLNLEDYKQMEFTCNVIYEAMRCGNVVKFLHREAIKDVKFKDIFIPSGWKVHPVFSAIHLDPTLHPYPQQFNPWRWRDDKEMSKKVTPFGGGPRLCPGIELAKLEIAFFLHHLVLNYRWKTSADECPLAYPYFHRNQLNLRCSFVHPIQLQSLFRLFIRAAHCRPLFLSLARVTARMPKEESFEVGLTTDCSPESSKKLKGSKKKKKQLLVEGVDVMERNVEGSFELWESNINSEVKNKKKRKKSTIQCVVENSIQAEAGEYEIKAERSVKEGSPLSDGGSEKNEILEERQFALENDENERADSIVRETSGEKILESNNGKTDQRNIKRKKRLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANMLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLKKKQKLREDSEMNSELADSQKLPKLIRNFPQTQPVADSAVQDKPKLSTNFLAGVFGGS | 888 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 20108482 | 20116120 | + | CmoCh04G027980.1 | Cmo04g02798 | 381773 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02798 | 888 | Pfam | Cytochrome P450 | 41 | 461 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | SUPERFAMILY | Cytochrome P450 | 38 | 464 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | CDD | RRM_ABT1_like | 680 | 777 | IPR034353 | - | |
Cmo04g02798 | 888 | Gene3D | - | 528 | 765 | IPR012677 | - | |
Cmo04g02798 | 888 | Coils | Coil | 823 | 843 | - | - | |
Cmo04g02798 | 888 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 425 | 434 | IPR017972 | GO:0005506|GO:0016705 | |
Cmo04g02798 | 888 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 680 | 762 | IPR000504 | GO:0003723 | |
Cmo04g02798 | 888 | SUPERFAMILY | RNA-binding domain, RBD | 677 | 762 | IPR035979 | GO:0003676 | |
Cmo04g02798 | 888 | PRINTS | E-class P450 group I signature | 432 | 455 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | PRINTS | E-class P450 group I signature | 283 | 300 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | PRINTS | E-class P450 group I signature | 73 | 92 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | PRINTS | E-class P450 group I signature | 390 | 414 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | PRINTS | E-class P450 group I signature | 422 | 432 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | PANTHER | CYTOCHROME P450, FAMILY 724, SUBFAMILY A, POLYPEPTIDE 1 | 44 | 465 | - | - | |
Cmo04g02798 | 888 | MobiDBLite | consensus disorder prediction | 834 | 853 | - | - | |
Cmo04g02798 | 888 | PANTHER | CYTOCHROME P450 26 | 44 | 465 | - | - | |
Cmo04g02798 | 888 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 683 | 762 | IPR000504 | GO:0003723 | |
Cmo04g02798 | 888 | SMART | rrm1_1 | 681 | 765 | IPR000504 | GO:0003723 | |
Cmo04g02798 | 888 | Gene3D | Cytochrome P450 | 32 | 479 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | PRINTS | P450 superfamily signature | 294 | 311 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | PRINTS | P450 superfamily signature | 351 | 362 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | PRINTS | P450 superfamily signature | 423 | 432 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cmo04g02798 | 888 | PRINTS | P450 superfamily signature | 432 | 443 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00838 | Cmo-Chr4:4170265 | Cmo04g02798 | Cmo-Chr4:20108482 | 6.61E-121 | dispersed | |
Cmo04g02798 | Cmo-Chr4:20108482 | Cmo14g01302 | Cmo-Chr14:10888100 | 2.28E-76 | dispersed | |
Cmo04g02798 | Cmo-Chr4:20108482 | Cmo04g01189 | Cmo-Chr4:6085173 | 5.42E-90 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02798 | K12639 | - | csv:101215045 | 704.516 |