Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02810 ATGGAGTCCGGTGATGGGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTCGATCCGAAGCAAATCCTTGTTGGGCCAAGGATTGGGGAGGGCGCACATGGCAAAGTGCACAAGGGGAAATACAAAAACGAAAATGTTGCTATTAAAATAATTCGAAGAGGTGAAACTCCAGAAGAAATTGCAAAAACTGAGGCACGCTTTGCTCGAGAGGTTGCAATGTTATCCAAAGTTCAGCACAAGAATCTTGCAAAGTTTATAGGTGCTTGCAAGGAGCCCATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTACGAAGGTACTTGTTGAGTATACGGCCAAGGTGCTTGGACTTGCACGAAGCAGCTTGTTTTGCACTTGATATAGCACGCGCAATGGAATGCCTGCATTCTCATGGGATCATTCACCGCGATCTCAAACCTGAGAATTTGATCTTGACCGGAGACCACAAAACTGTTAAGCTTACAGACTTCGGTTTGGCTAGAGAAGAGTCAGTAACAGAAATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATATAGTACGGTCACTTTAAGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTATAGCTTTGGAATTGTATTCTGGGAGATCGTCCAAAATAAGTTGCCTTTCGAAGGCATGTCGAATCTACAAGCAGCATATGCAGCTGCTTTTAAGGTGATTTCTTGTACTGTCATTGGACTATATCTATACAATTTCCGACCGAATGCCGAGAACCTCCCGGAGTATTTGGCCCCGATTATAACTTCCTGTTGGACAGAGGATCCGAATACTCGGCCGAACTTCAGCGAAATCATACAGATGCTCTTGAAATATCTCTCCACCATTCCACAGCCAGAGTATGTTACACCACCAACAGTGCAGGCACCTGAGAATGCAGTGCTGCCACCAGAGTCTCCTGGAACTAGTTCTTTGATGGCAGCCACAAGACGTGGCACGGGGGATGTCCCGAAAAGCGAGATAGAAGAGAAACCAAGCAGGTTCTTCTCATGTTTCTCTGGTAGCTGTTACTGA 1098 45.08 MESGDGLCSKEFDLDAKWLVDPKQILVGPRIGEGAHGKVHKGKYKNENVAIKIIRRGETPEEIAKTEARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLLGGTLRRYLLSIRPRCLDLHEAACFALDIARAMECLHSHGIIHRDLKPENLILTGDHKTVKLTDFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIVQNKLPFEGMSNLQAAYAAAFKVISCTVIGLYLYNFRPNAENLPEYLAPIITSCWTEDPNTRPNFSEIIQMLLKYLSTIPQPEYVTPPTVQAPENAVLPPESPGTSSLMAATRRGTGDVPKSEIEEKPSRFFSCFSGSCY 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20168778 20171757 - CmoCh04G028100.1 Cmo04g02810 381785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02810 365 PANTHER SERINE-THREONINE PROTEIN KINASE 1 340 - -
Cmo04g02810 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cmo04g02810 365 Gene3D Transferase(Phosphotransferase) domain 1 106 314 - -
Cmo04g02810 365 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Cmo04g02810 365 PIRSF TyrPK_CSF1-R 114 327 - -
Cmo04g02810 365 PIRSF TyrPK_CSF1-R 11 119 - -
Cmo04g02810 365 PANTHER BNAA06G32000D PROTEIN 1 340 - -
Cmo04g02810 365 Pfam Protein tyrosine and serine/threonine kinase 29 297 IPR001245 GO:0004672|GO:0006468
Cmo04g02810 365 ProSitePatterns Protein kinases ATP-binding region signature. 31 52 IPR017441 GO:0005524
Cmo04g02810 365 ProSiteProfiles Protein kinase domain profile. 25 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02810 365 SUPERFAMILY Protein kinase-like (PK-like) 17 325 IPR011009 -
Cmo04g02810 365 CDD STKc_MAP3K-like 31 297 - -
Cmo04g02810 365 MobiDBLite consensus disorder prediction 323 347 - -
Cmo04g02810 365 SMART serkin_6 25 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02810 Cmo11g01659 CCT
Cmo04g02810 Cmo14g00693 CCT
Cmo04g02810 Cmo11g01659 ECH
Cmo04g02810 Cmo14g00693 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02810 Cmo-Chr4:20168778 Cmo14g00014 Cmo-Chr14:77131 4.66E-139 dispersed
Cmo10g00095 Cmo-Chr10:410087 Cmo04g02810 Cmo-Chr4:20168778 0 wgd
Cmo11g01659 Cmo-Chr11:11780192 Cmo04g02810 Cmo-Chr4:20168778 0 wgd
Cmo14g00693 Cmo-Chr14:3568346 Cmo04g02810 Cmo-Chr4:20168778 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74323 PF07714 PK_Tyr_Ser-Thr 4.80E-54 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02810 - - csv:101220915 618.231