Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g02817 | ATGGCTTCTTCATCCAGCTTCTCAAATTCACCATGTGCAGCATGCAAGTTCCTCCGAAGAAAATGCTTAGCGGACTGCATATTTGCGCCCTACTTTCCACCCGAAGAGCCCACCAAGTTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCCATGAGGTCCACCCCCATCAGCGCGAGGACGCCGTCAATTCTCTTGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGCTGCGTCGGAGCCATCTCTATCCTTCAGCGACAAGTCATTCGCCTCCAGAAGGAGCTTGACGCTACGAATGCTGATTTGGTTCGATATGCCAGCGGGGGCGCTCGCCCGTATGGACGGAGGGCAGCAGCGCAGTCTGGTGTGTGTTTTATTTCCCCCTTGAATACTAATGATCGTCATGATCCATATTGCCGTGATAAAGAGGAACAAAATTGA | 468 | 52.14 | MASSSSFSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLHEVHPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIRLQKELDATNADLVRYASGGARPYGRRAAAQSGVCFISPLNTNDRHDPYCRDKEEQN | 155 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 20199087 | 20199554 | + | CmoCh04G028170.1 | Cmo04g02817 | 381792 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g02817 | 155 | Coils | Coil | 90 | 110 | - | - | |
| Cmo04g02817 | 155 | ProSiteProfiles | LOB domain profile. | 10 | 111 | IPR004883 | - | |
| Cmo04g02817 | 155 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 118 | - | - | |
| Cmo04g02817 | 155 | Pfam | Lateral organ boundaries (LOB) domain | 11 | 107 | IPR004883 | - | |
| Cmo04g02817 | 155 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 4 | 118 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g02817 | Cmo14g00684 | CCT | |
| Cmo04g02817 | Cmo11g01668 | CCT | |
| Cmo04g02817 | Cmo14g00684 | ECH | |
| Cmo04g02817 | Cmo11g01668 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02817 | Cmo-Chr4:20199087 | Cmo05g00781 | Cmo-Chr5:4480338 | 1.55E-58 | dispersed | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo04g02817 | Cmo-Chr4:20199087 | 2.38E-64 | wgd | |
| Cmo11g01668 | Cmo-Chr11:11836728 | Cmo04g02817 | Cmo-Chr4:20199087 | 8.71E-69 | wgd | |
| Cmo11g00077 | Cmo-Chr11:363795 | Cmo04g02817 | Cmo-Chr4:20199087 | 2.38E-63 | wgd | |
| Cmo13g00898 | Cmo-Chr13:8029265 | Cmo04g02817 | Cmo-Chr4:20199087 | 4.97E-57 | wgd | |
| Cmo14g00684 | Cmo-Chr14:3497304 | Cmo04g02817 | Cmo-Chr4:20199087 | 1.23E-69 | wgd | |
| Cmo18g00146 | Cmo-Chr18:1025085 | Cmo04g02817 | Cmo-Chr4:20199087 | 1.21E-56 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9738 | PF03195 | LOB | 1.90E-41 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g02817 | - | - | csv:101216489 | 254.988 |