Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02826 ATGCAGAGCGCTGTATTGGCTTTGGCCATGTGTTTTTCCCCCAACACTCCTGCTAGGGCTACTTCTTTTCCATTGCCTCTAATTTCATGCCGACTTCGAAGCCCTAATTTGCCTCACTTTCCTCACATTGTTCCGTTTCGTTCCTTCTCATCCTCGATCGCTGTTTCTTGCTCCGGATTCAGTTCGAGGCTCCAGAAATTCACGAGAACTGCGGCTTCCTTGCCGGAGAGCGCCGGCGAGGCTGAGGAATCGGCCGATTTCGTTAACAATCTGCGACTTGGTTCAATGTTTGGTGTTTGGTACCTCTTGAATATCTACTACAACATTTTCAACAAACAGGTTCTGAAAGCCTTCCCCTTTCCAACTACGGTGACAGCTTTTCAATTCGCGTGTGGGACGGTCATGGTAAGCTTAATGTGGGCTCTCAATTTTCATCCCAGACCCAACGTCAATCGCTCCCAGTTTGCTGCCATTCTTCCGCTGGCTGTAGCGCACACCATGGGCAACATATTGACCAATGTGAGTCTTGGCAAAGTTGCGGTTTCATTCACTCACACCATCAAAGCAATGGAGCCCTTTTTCACTGTCCTTCTCTCTGCTTTCTTCTTGGCTGAGAGGCCCACATTTTGGGTTGTTCTTTCGCTCATACCCGTTGTAGGAGGAGTGGCACTCGCATCTTTTACTGAAGCCTCATTTAATTGGATTGGGTTCAGCAGTGCCATGGCTTCAAATCTCACAAATCAATCACGTAATATCTTCAGTAAAAAGCTCATGGTCCACAAAGAGGCACTGGACAATATCAATCTCTTCTCTGTAATTACTATCATTTCATTTACCCTGCTGGTTCCCTCGGCTCTTCTCCTTGAAGGCACTAAATTTAGTCCTTCATACCTGCAATTAGCTGCAAATCAAGGGTTGAATGTCAGCGAGCTATGCATTAGGTTGCTTCTATCTGGCATTTGTTTTCATAGCTACCAGCAGGTTTCTTATTCAATACTACAGGAAATTTCACCAGTAACCCATGCAGTAGGGAACTCTCTGAAGCGGGTGGTGGTGATAGTGTCCTCTGTTATTTTCTTCCAAACAGCCGTCTCACATCTAAACGCCCTCGGAACTGGGATTGCTCTCGTGGGAGTCTTTTTGTATTCAAGGGCTAAGCGTATGAACTCAAAGCCGAAGACTCTATAA 1188 46.3 MQSAVLALAMCFSPNTPARATSFPLPLISCRLRSPNLPHFPHIVPFRSFSSSIAVSCSGFSSRLQKFTRTAASLPESAGEAEESADFVNNLRLGSMFGVWYLLNIYYNIFNKQVLKAFPFPTTVTAFQFACGTVMVSLMWALNFHPRPNVNRSQFAAILPLAVAHTMGNILTNVSLGKVAVSFTHTIKAMEPFFTVLLSAFFLAERPTFWVVLSLIPVVGGVALASFTEASFNWIGFSSAMASNLTNQSRNIFSKKLMVHKEALDNINLFSVITIISFTLLVPSALLLEGTKFSPSYLQLAANQGLNVSELCIRLLLSGICFHSYQQVSYSILQEISPVTHAVGNSLKRVVVIVSSVIFFQTAVSHLNALGTGIALVGVFLYSRAKRMNSKPKTL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20236593 20240644 + CmoCh04G028260.1 Cmo04g02826 381801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02826 395 Pfam Triose-phosphate Transporter family 92 383 IPR004853 -
Cmo04g02826 395 PANTHER PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 45 389 - -
Cmo04g02826 395 PANTHER SOLUTE CARRIER FAMILY 35 45 389 - -
Cmo04g02826 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 312 387 - -
Cmo04g02826 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 130 228 - -
Cmo04g02826 395 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 91 393 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02826 Cmo-Chr4:20236593 Cmo06g01183 Cmo-Chr6:9021392 8.34E-73 dispersed
Cmo13g00914 Cmo-Chr13:8091354 Cmo04g02826 Cmo-Chr4:20236593 8.17E-148 wgd
Cmo18g00130 Cmo-Chr18:937564 Cmo04g02826 Cmo-Chr4:20236593 4.61E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02826 K15283 - csv:101217436 620.542