Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02828 ATGGGGTTGACCTTCACCAAGCTCTTCAGCAAGCTTTTTGCTAAGAAAGAGATGCGCATTTTGATGGTTGGTCTTGATGCTGCCGGTAAGACCACGATATTGTACAAGCTCAAGCTCGGAGAAATTGTCACAACCATTCCTACAATCGGATTTAATGTGGAGACTGTGGAATACAAGAACATCAGCTTCACCGTCTGGGATGTTGGTGGTCAGGACAAAATTCGTCCGCTGTGGAGGCATTACTTCCAAAACACACAGGGTCTTATATTTGTTGTGGATAGTAATGACAGGGATCGTGTTGTTGAAGCAAGAGATGAGTTGCACAGAATGTTGAATGAGGATGAACTGAGAGATGCTGTGTTGCTCGTATTTGCCAACAAGCAAGATCTTCCTAATGCGATGAATGCTGCAGAAATTACCGACAAGCTTGGTCTTCATTCACTCCGTCAACGACACTGGTACATACAGAGCACGTGTGCAACATCTGGAGAGGGTCTATACGAGGGTTTAGACTGGCTTTCCAACAATATTGCTAGCAAGATCATTTGTAAATCTGGAAGCCTCCCTTCTTTTTACAGGCATGAAGCGGTTGAGGCTCTTGAATGTCAGACTGAGCTGTGGGTAAAGTTTGGCGATGATAGGGGTATGGTTCACTTTTCTCAAGAAGTGTCATTAGCAGCAGAACAGTTTGAAACTTCTATATGTATTTTCTATTTGTATACTTGTGACTTGATCTAA 738 43.22 MGLTFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKIICKSGSLPSFYRHEAVEALECQTELWVKFGDDRGMVHFSQEVSLAAEQFETSICIFYLYTCDLI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20244906 20249432 + CmoCh04G028280.1 Cmo04g02828 381803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02828 245 TIGRFAM small_GTP: small GTP-binding protein domain 16 156 IPR005225 GO:0005525
Cmo04g02828 245 SMART arf_sub_2 1 181 - -
Cmo04g02828 245 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Cmo04g02828 245 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 180 IPR024156 GO:0005525
Cmo04g02828 245 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Cmo04g02828 245 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Cmo04g02828 245 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Cmo04g02828 245 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Cmo04g02828 245 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Cmo04g02828 245 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Cmo04g02828 245 Gene3D - 5 185 IPR027417 -
Cmo04g02828 245 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Cmo04g02828 245 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 180 - -
Cmo04g02828 245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
Cmo04g02828 245 SMART rab_sub_5 18 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02828 K07937 ARF1_2; ADP-ribosylation factor 1/2 - ncol:116255080 364.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02828 Cmo18g00798 CCT
Cmo04g02828 Cmo14g00674 CCT
Cmo04g02828 Cmo11g01684 CCT
Cmo04g02828 Cmo18g00798 ECH
Cmo04g02828 Cmo11g01684 ECH
Cmo04g02828 Cmo14g00674 ECH
Cmo04g02828 Cmo15g00357 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01820 Cmo-Chr4:9163902 Cmo04g02828 Cmo-Chr4:20244906 9.47E-108 dispersed
Cmo04g02828 Cmo-Chr4:20244906 Cmo11g01684 Cmo-Chr11:11937899 1.75E-132 dispersed
Cmo05g00710 Cmo-Chr5:3636582 Cmo04g02828 Cmo-Chr4:20244906 7.60E-83 dispersed
Cmo12g01019 Cmo-Chr12:9515080 Cmo04g02828 Cmo-Chr4:20244906 2.64E-82 dispersed
Cmo07g00486 Cmo-Chr7:2215428 Cmo04g02828 Cmo-Chr4:20244906 8.34E-53 transposed
Cmo07g00694 Cmo-Chr7:3138882 Cmo04g02828 Cmo-Chr4:20244906 1.48E-94 transposed
Cmo08g00481 Cmo-Chr8:2972450 Cmo04g02828 Cmo-Chr4:20244906 1.39E-126 transposed
Cmo17g00989 Cmo-Chr17:8556278 Cmo04g02828 Cmo-Chr4:20244906 3.60E-110 transposed
Cmo11g01682 Cmo-Chr11:11927314 Cmo04g02828 Cmo-Chr4:20244906 2.07E-131 wgd
Cmo14g00673 Cmo-Chr14:3423946 Cmo04g02828 Cmo-Chr4:20244906 1.65E-127 wgd
Cmo15g00357 Cmo-Chr15:1671700 Cmo04g02828 Cmo-Chr4:20244906 3.94E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
Vvi14g1341 . . Bda01g01281 Bda13g01621 Bpe02g01496 Bpe14g00245 . . Cmo14g00674 Cmo11g01684 Cma11g01436 Cma14g00659 . . . . . Bhi06g00533 . . . Hepe02g1810 . . Cla10g01344 Cam10g1267 Cec10g1423 Cco10g1399 Clacu10g1400 Cmu10g2171 Cre10g1555 . . . . Lsi02g01575 Csa05g02332 Chy04g01450 Cme04g01875 Blo17g00302 Blo18g00332 . . . . Bma01g00973 Bma02g00360 . Cmo04g02828 Cmo15g00357 Cma04g02699 Cma15g00349 . . . . Bhi11g03096 . . . . . . Cla09g01865 . . . . . . . Csa03g03948 Chy09g00345 Cme09g00395
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02828 Cmo_Chr04 FPKM 2.459259 3.119248 8.215529 8.521191 0.463224 0.0 0.294282 0.0 0.232613 0.207313