Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02836 ATGGAGATTCCTTCAGAAAAAAGATATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTAAAGGAGACTGTCGCTATAAAGGCTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACGATGACTTTGATTGATCATCCAAATTTGTTAAAAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTTTTCTGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTAAAACTAGCTGATTTTGGAGTCTCGGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTTGGAACTCCATGCTGGATGGCACCGGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAGGAAATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCCTAGTGAAGGATCCAAAGAAACGTCCCAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAACATGCCCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGAACGCTTTAAGAAGCTAAAGGCAAAGGAGGCTGATCTTCTGGTGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAATATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATGGAAGATCTAGATGTACATACAACAATGCAAAGAAACAAGAATAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGAAAGTCCGAATCACCGAAGTGCTGCCGCTAGTCAGGAGGATGGTTTCAGTGATCTACATTATTTGGAGAGTTCCCTTGCTTCTTTCCCTACAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTCAATAGGGAAAATGGAAGAATCGAGGGTGAGAGTTCAGGGCAAAGTGGTCCCCTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTATAGTGGTTCATTAATTTCTGACAATGCTGGTTCTCCTAAAAAGATTGTTGTAGATGGTGATAGGGATTATGTGCAGTCAAAATTTCCATCTGAACGTAATTTCAGTGGTCCATTATTATATCGCCAAAAAAGAGATACAAATAACATATCATCTGTTGAGGATACATCAGATGGAACAGTAGTTCAATGCAAGGGGCGGTTTAAAGTTACTTCAGCGGAGCTTAGTCCGAAGGGTCCTATGACGGGTTCATTTAGCCCAATCTGTGGAGGGACAATGAGCCCAACATCCCTGAACCTTACGCCTTCTTTACTCCTCCCATCAATGCAATGTATTCTGCAGCAGAACATCCTGCAACGGGAAGAAATCGTTAAATTGATCAAGTATTTGGAACAATTGACTGGCAAGAATCCAGATGTATCAGAGACGGCCACTAGTGACCCTCTGCAGATACCACCGGCTTCCTTGAGGGAAAGAGAGTTACAGTCTCAGGTCCTTCATCTGCAGCAGAGGATTGATAATCTCAACGAGGAATTAGAGAAGCAGAAGTTGAAAAATGCCGAGTTCGAAAGACACGTGATTTCTATGGCAAATAAAGAGAAAACATAA 2016 42.06 MEIPSEKRYPVNAKDYNLHEEVGEGVSATVYKALCIPLKETVAIKALDLEKCNNDLDGIRREVQTMTLIDHPNLLKAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAFSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLVQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNMEDLDVHTTMQRNKNNDFSFPVEGSSLESPNHRSAAASQEDGFSDLHYLESSLASFPTKPLEALKDCFDIYEDISTDSVRPVNRENGRIEGESSGQSGPLPRHYMSENKRSYSGSLISDNAGSPKKIVVDGDRDYVQSKFPSERNFSGPLLYRQKRDTNNISSVEDTSDGTVVQCKGRFKVTSAELSPKGPMTGSFSPICGGTMSPTSLNLTPSLLLPSMQCILQQNILQREEIVKLIKYLEQLTGKNPDVSETATSDPLQIPPASLRERELQSQVLHLQQRIDNLNEELEKQKLKNAEFERHVISMANKEKT 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20276632 20285590 - CmoCh04G028360.1 Cmo04g02836 381811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02836 671 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02836 671 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cmo04g02836 671 MobiDBLite consensus disorder prediction 439 465 - -
Cmo04g02836 671 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02836 671 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 669 - -
Cmo04g02836 671 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02836 671 MobiDBLite consensus disorder prediction 372 396 - -
Cmo04g02836 671 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 669 - -
Cmo04g02836 671 MobiDBLite consensus disorder prediction 372 397 - -
Cmo04g02836 671 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cmo04g02836 671 Gene3D Transferase(Phosphotransferase) domain 1 97 315 - -
Cmo04g02836 671 CDD STKc_OSR1_SPAK 14 277 - -
Cmo04g02836 671 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Cmo04g02836 671 Coils Coil 627 661 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02836 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 1243.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02836 Cmo15g00350 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00200 Cmo-Chr1:897957 Cmo04g02836 Cmo-Chr4:20276632 0 dispersed
Cmo04g02836 Cmo-Chr4:20276632 Cmo06g00592 Cmo-Chr6:2913131 2.06E-180 dispersed
Cmo14g00685 Cmo-Chr14:3500450 Cmo04g02836 Cmo-Chr4:20276632 1.96E-36 dispersed
Cmo16g01271 Cmo-Chr16:9072710 Cmo04g02836 Cmo-Chr4:20276632 2.33E-37 dispersed
Cmo14g01826 Cmo-Chr14:13910049 Cmo04g02836 Cmo-Chr4:20276632 2.43E-112 transposed
Cmo15g00350 Cmo-Chr15:1636510 Cmo04g02836 Cmo-Chr4:20276632 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02836 . . . . . Cpe13g00900 . . . . . . . . . . . . . . . . . Chy09g00338 .
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g01271 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 62.2 8.6e-223 770.8
Cmo09g00844 CST 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 61.4 2.2e-218 756.1
Cmo01g01271 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 64.0 1.0e-228 790.4
Cmo09g00844 CST 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 62.7 4.9e-226 781.6
Cmo18g01122 . 4 831 MAP Kinase Kinase Kinase Kinase AT1G69220 57.4 1.2e-231 800.4
Cmo01g01271 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 8.3e-68 256.1
Cmo09g00844 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 1.1e-67 255.8
Cmo04g02836 CST 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 65.0 2.6e-248 855.5
Cmo15g00350 CST 1 727 MAP Kinase Kinase Kinase Kinase AT5G14720 61.0 4.1e-238 821.6
Cmo16g01274 . 6 143 MAP Kinase Kinase Kinase Kinase AT5G14720 55.0 1.6e-48 191.8
Cmo06g00592 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 6.4e-245 844.3
Cmo16g01271 CST 18 489 MAP Kinase Kinase Kinase Kinase AT4G24100 53.8 6.9e-114 409.1
Cmo16g01274 . 7 143 MAP Kinase Kinase Kinase Kinase AT4G24100 62.6 4.1e-58 223.8
Cmo06g00592 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 4.8e-242 834.7
Cmo16g01271 CST 18 490 MAP Kinase Kinase Kinase Kinase AT4G10730 54.7 4.1e-116 416.4
Cmo16g01274 . 11 143 MAP Kinase Kinase Kinase Kinase AT4G10730 61.1 6.9e-55 213.0
Cmo01g00200 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 51.3 2.5e-133 473.4
Cmo06g00592 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.6e-116 417.5
Cmo01g00200 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 2.1e-218 756.1
Cmo15g00350 CST 1 327 MAP Kinase Kinase Kinase Kinase AT1G23700 59.4 1.3e-103 374.4
Cmo04g02836 CST 6 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 2.0e-101 367.1
Cmo01g00200 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 7.4e-88 322.0
Cmo06g00592 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 1.0e-73 275.0
Cmo14g01826 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 1.5e-144 510.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74324 PF00069 Pkinase 2.20E-59 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02836 Cmo_Chr04 FPKM 75.445351 82.080162 108.103996 103.528 28.366634 24.773767 25.24181 3.063034 3.296878 2.557101