Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02842 ATGGATCACCCATCTGAAACACTAAGGCACAAATGTGCAGCTTGCTTCAGGCAGTTCAACAAGATAGAGCACTTGGTAGAGCATATGAGACTCTCGTTTCACTCTCTTCATGAACCCACTTGCTCCCTTTGCCACAAACACTGCAGATCCTTTGAATCTCTCCGGGAACATCTCATTGGGCCTCGGCCTAAGCAAGAATGCAACAACGTATTCGTCATAAGAGGATGCAAAATCTGCTTAGCCATCTTTGAGAGTCCTCACACCTTGAGGCTTCACCAAGAAAGATGTCAACTTCGATCTCCAAATTCGAGTCAAATCACGACCCGTTTTCGCAACATGGGAATTTGTGACAAATTGACGAGCGACAACGGCCGCATGAGGCGCCATGAAGCAGTGGCATTGGCATGCAGAATGGTGGGCGGTGGCAGCGATGGGTCGTTAGATATATGCGCAAGGGTGTGCCTGATTGACGAAAACGAAACCATCATTTTCTCTACTTATGTCAACCCAACGCTCCCCATCACAAACTATAGGTTGGAGTCCACGGGCGTTGGTCCAGAATACATGAGGGATCGTGCAATGCCATTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTGTGCAATGGTGAGCCGATGTGGAAGATTCGACCTGGGGTGGGAGGAAAAGCAAGGATTCTTGTGGGTCATGGCTTGGGAGATCACCTCAAAAGCTTGCAAATTGAGTATCCACCATTCATGATAAGATACGATATTCAAAACGGAAGCAAAGATCCTTATGAAGATTGTGTAGCGACCATGAGGTTGTACATGAGAATGAGATCCCAAGTTCACAAGATAGAGGAGTATCCATTGGCTTCTGACCCACAAAACAAGAACAATTTTGCAATTTGGAAGCAATTTGAGCTTGAAAGGATGAGCCCAGAACAGATGTTGGAAGTCTCAAGATCTGATTATTATTGCTGGTGCTTGGACTCCAAGCTTTAA 987 45.8 MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20309931 20313103 + CmoCh04G028420.1 Cmo04g02842 381817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02842 328 SUPERFAMILY Ribonuclease H-like 144 275 IPR012337 -
Cmo04g02842 328 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Cmo04g02842 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Cmo04g02842 328 Gene3D - 126 249 IPR036397 GO:0003676
Cmo04g02842 328 PANTHER OS02G0709000 PROTEIN 3 249 - -
Cmo04g02842 328 PANTHER OS02G0709000 PROTEIN 250 326 - -
Cmo04g02842 328 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 249 - -
Cmo04g02842 328 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 250 326 - -
Cmo04g02842 328 SMART exoiiiendus 130 279 IPR013520 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02842 Cmo15g00343 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01857 Cmo-Chr2:10481547 Cmo04g02842 Cmo-Chr4:20309931 9.94E-100 dispersed
Cmo04g02842 Cmo-Chr4:20309931 Cmo09g00830 Cmo-Chr9:4266851 2.11E-11 dispersed
Cmo15g00343 Cmo-Chr15:1597157 Cmo04g02842 Cmo-Chr4:20309931 3.93E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9741 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02842 - - qsu:111996861 497.278