Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02845 ATGATGACGGACGGTTTGATCTTCAACCGGTCTCCAGGTCACAGCAACATGCTGTTTTTCGGTAGTGGCGATTCCGTTCTTCGTGGACCAAGGTTCGCGATGGGGATGGAGGAAACTTCAAAGAGGCGACCCTTTTTCAGCTCACCGGATGACCTGTTCGACGACGACTACTACGATGACCAACCGCCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGTTTTGAATCAGAAAATAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAACAAACTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAATCGCCGAGCTCGATGGAAGACAAAGCAGCTCGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCGAGCTACGACTTTGTTGTCAAGGAGAATGAAAGGCTCAAAGCTGAGGTAGCTTCATTATCTGAGAAACTTCTAGCTAAGGAAGTGGTTGAATCCTCGTTTCAAGCTAAGAAATCCGAGCCATTTTTGGAACACCAAATCCTTGTTCCTGTTGTGCAACACAGCATGAAGATTGAGGACCACCATAGTTGCAGGAGCAATGGAAGTGCCGTGCTGGACGAGGACGGTCCTCATCTCTTAGACAGTGGGGATTCGTACCTCCTGAGCAATGACTATAATGGCTGTGTTTTGCCTGTTTTTGGAATGAACTCGGAGGAGGAGGATGGAAGTGACGATGGTCAGGGTTACTTCTCAGCCATTTATACAACAGACGATCAGCAGACGAATGAGGTAGAGCCTTTGACCTGGTGGGACTGGACGTCGTAA 837 48.51 MMTDGLIFNRSPGHSNMLFFGSGDSVLRGPRFAMGMEETSKRRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELANKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFVVKENERLKAEVASLSEKLLAKEVVESSFQAKKSEPFLEHQILVPVVQHSMKIEDHHSCRSNGSAVLDEDGPHLLDSGDSYLLSNDYNGCVLPVFGMNSEEEDGSDDGQGYFSAIYTTDDQQTNEVEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20319544 20321353 + CmoCh04G028450.1 Cmo04g02845 381820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02845 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Cmo04g02845 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Cmo04g02845 278 SMART HOX_1 63 124 IPR001356 GO:0003677
Cmo04g02845 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 259 IPR045224 GO:0003700
Cmo04g02845 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Cmo04g02845 278 Gene3D - 58 126 - -
Cmo04g02845 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 4 259 - -
Cmo04g02845 278 Pfam Homeobox associated leucine zipper 120 161 IPR003106 GO:0006355|GO:0043565
Cmo04g02845 278 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Cmo04g02845 278 Coils Coil 140 167 - -
Cmo04g02845 278 CDD homeodomain 65 121 IPR001356 GO:0003677
Cmo04g02845 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Cmo04g02845 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02845 Cmo14g00654 CCT
Cmo04g02845 Cmo11g01698 CCT
Cmo04g02845 Cmo15g00340 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00828 Cmo-Chr4:4132503 Cmo04g02845 Cmo-Chr4:20319544 9.85E-27 dispersed
Cmo04g02845 Cmo-Chr4:20319544 Cmo13g00956 Cmo-Chr13:8306478 1.04E-40 dispersed
Cmo11g01698 Cmo-Chr11:12022787 Cmo04g02845 Cmo-Chr4:20319544 6.12E-67 wgd
Cmo14g00654 Cmo-Chr14:3312300 Cmo04g02845 Cmo-Chr4:20319544 5.30E-65 wgd
Cmo15g00340 Cmo-Chr15:1583354 Cmo04g02845 Cmo-Chr4:20319544 5.65E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9742 PF00046 Homeodomain 3.60E-17 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02845 K09338 - csv:101210106 473.781