Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02852 ATGGCGGGAAGTTACTTTATGGAAGGCGTTCTGCCATTTCCGGCGATGGTAACCATGGAGTGCATCAACGTCGGTCTCAACACTCTTTTCAAAGCCGCCACCGCCTCCGGCATGAGCCACCACGTCTTCATCGTTTATTCTTACTCCCTCGCAGCCTTCTTCCTCCTCCCTTCTCCCTTCATCTCTCGCAGATCCACGCGGCTTCCACCGCTCAATTTCTCTATACTCTCCAAGATCGCTCTTCTCGGACTCATCGGTTCTTGTTCGCAGATAATGGGATACACGGGAATCAATTACAGTTCTCCGACTCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTCGCCATCATTTTCAGGATGGAGAAAGTGGTGATGAAGAGCAGTAGCAGTCAAGCAAAAGTAATGGGCACCATAATATCCATATCAGGTGCATTTGTAGTTACTCTTTACAAGGGTCCAAGGGTCATATTCTCTTCACCACCCACATCTCTTTCCCTCCATCATCCACTTACCTCTTCAGATTCTAATTGGGTCATTGGCAGCCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGGCAACAGTGATCTTCTTCTACAACATAACTGTGGCCTTCATAGCTGCAGTTGTAGGTGTGATCTTAGAGACAGATCCAAGTGCTTGGATTTTGAGGCAAAATACAGCGTTGGCCTCTGTTTTATGCTCCGGACTTTTTGGATCATGCTTGAATAATACAGTTCATACATGGGCACTCCGGTTGAAAGGGCCAGTGTTTGTAGCGATGTTTAAGCCACTGTCGATTGTCGTTGCCATTGTAATGGGTGTTCTGTTTCTTGGTGATTCTCTATATCTTGGAAGTCTTATTGGAGCATCCATAATTTCCATAGGGTTTTATACTGTAATGTGGGGAAAAACAAGAGAAGAAGTGGGCGATGAAGAAGAAAAAGAAAGGCATAGCCATAATGTTAGTGATGACAAGGAACCACATGAAGATCAGAAAGTACCTCTTCTTGGAAACTACAACTCACAGAGATACAGTTCAGATCATGTATGA 1116 44.53 MAGSYFMEGVLPFPAMVTMECINVGLNTLFKAATASGMSHHVFIVYSYSLAAFFLLPSPFISRRSTRLPPLNFSILSKIALLGLIGSCSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVVMKSSSSQAKVMGTIISISGAFVVTLYKGPRVIFSSPPTSLSLHHPLTSSDSNWVIGSLLLTAEYILVPLWYIVQTKIMKEYPEEATVIFFYNITVAFIAAVVGVILETDPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYTVMWGKTREEVGDEEEKERHSHNVSDDKEPHEDQKVPLLGNYNSQRYSSDHV 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20345051 20348223 + CmoCh04G028520.1 Cmo04g02852 381827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02852 371 MobiDBLite consensus disorder prediction 330 371 - -
Cmo04g02852 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 327 - -
Cmo04g02852 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 156 - -
Cmo04g02852 371 MobiDBLite consensus disorder prediction 330 354 - -
Cmo04g02852 371 MobiDBLite consensus disorder prediction 357 371 - -
Cmo04g02852 371 PANTHER WAT1-RELATED PROTEIN 9 341 IPR030184 GO:0016021|GO:0022857
Cmo04g02852 371 Pfam EamA-like transporter family 194 322 IPR000620 GO:0016020|GO:0016021
Cmo04g02852 371 Pfam EamA-like transporter family 24 153 IPR000620 GO:0016020|GO:0016021
Cmo04g02852 371 PANTHER WAT1-RELATED PROTEIN 9 341 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02852 Cmo18g00829 CCT
Cmo04g02852 Cmo11g01705 CCT
Cmo04g02852 Cmo18g00829 ECH
Cmo04g02852 Cmo11g01705 ECH
Cmo04g02852 Cmo15g00335 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00304 Cmo-Chr4:1517790 Cmo04g02852 Cmo-Chr4:20345051 1.89E-67 dispersed
Cmo04g01656 Cmo-Chr4:8442498 Cmo04g02852 Cmo-Chr4:20345051 1.27E-46 dispersed
Cmo04g02852 Cmo-Chr4:20345051 Cmo11g01705 Cmo-Chr11:12105277 1.11E-92 dispersed
Cmo11g01704 Cmo-Chr11:12093252 Cmo04g02852 Cmo-Chr4:20345051 1.21E-72 wgd
Cmo15g00332 Cmo-Chr15:1540074 Cmo04g02852 Cmo-Chr4:20345051 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02852 - - csv:101208880 596.275