Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02856 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTCCATAGACATACTCAACCTATTTGGGCTTTCGAGAAAAATTCTCCATCGGTTGCAGTTTCAGAGGTAACCAGTAGTCCCACACGGAAATGGCGGATCTTCAGTCGATCGTCTTCTTCCCCATTTTCGTCCAACCCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCGGGGTCTTTAATGGCGGACCCTGTAATTGTCTCCTCTGGCCACACATTCGAGGCCGCCTGTGTTCAAGTTTGTAAAGATTTAGGCTTCAAGCCGACTTTGTTAGATGGTTCGAAGCCGGATTTCACCTCTGTAATCCCGAATCTGGCTCTGAAATCCACCATTTTCAACTGGTGTAGAAACTCCTCCTCTGAACCCCCAAAACCACTCGATTTCTCCTCCGCCGAAAAGCTCGTTGGTAAGTTCATGGCAGACCACAGGAAAAGCGATGACGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACTCCGCCACCGATGTAACTCGTCGGGAATCTCATTTCTACTCGAGCTCCGATCAATCTGTCGCCGCCGTTCCGAGTCTGCCCCTTCCTCTCGCGACTCGACCGAGTTCTTCCTCTGAAAGTGAGATCTCTACTCTGAACTCCACTGAAGAAGAAGAGATCCTTGCGAAGCTTAAAAGCCCTCAGGTTACTGAGATCGAAGAGGGTGTGGTTACGCTGAGAAAAATCACGAGAATTCGAGAGGACACTAGGCTTTATCTCTGTTCCCCTTTGATTCTCTCTGCTCTTCGGTCTCTTATCGTCTCAAGGTACAGCAGCATTCAGGTGAATTCAGTTGCAGCACTGGTGAATCTGTCCTTAGAGAATATGAACAAGGTCAAGATCGTACGGTCCGGATTTCTCCCCAATTTGATCGATATTCTTAAAACGGGTTCCCCGGAGGTTCAGGAACATGCCGCCGGTGCCATTTTCAGCTTAGCTCTCCACGACGACAACAAGACGGCGATCGGCGTATTGGGTGCTCTGCCATCATTGATACGGCTGTTGGTATCCCACTCGGAGCAGACCCGACACGACTCGGCTCTTGCTCTGTACCACTTATCGCAAGTTCAGAGCAACCGTTCGAAGCTAGTGAAACTTGGGTCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCGGCCTCATGGTCGGCCGGATTTTTCTTATATTGTGTAATTTAGCAGCGTGTTTCGAGGGTCGTGCGGCATTGTTGAACTCCGGCGCGGTGGAATGTTTAGTGGGGATGTTAAGAGAGAACGAGTTGGACTCCGAGTCGACACGGGAGAGTTGCGTGGCGGTTCTGTTAGAACTGAGTTACAGTAATTTGCGGTTCAAAGGTCTGGCCAAAACCGCCGGAGCAATGGAGGTTTTCATGGCGGTGGAGGAAAACGGAAGTGAGAGATTACAAGAGAAGGTGAAGAGGATGATGGAGTCCATGAAAGTCAGAGAGGAAGAAGCTGGGAATGTGAATTGGGAGGAACTGCTAGACTCGGGTTCTTCCAGCAGCAGCCAAACTCGGTGTCGACTGGTCGCCGGAATGGATAGTTCAATGCTCGTAAGATTCATTCATGATTTTGATGAACAAGGAACAGAACAATGGCGATATCTTCACTTTACTTTGGATCTTATAATAATCGATCATAAACAATCAAAAAGAGGGGTATAG 1731 48.53 MEFQEGLMKFMVHRHTQPIWAFEKNSPSVAVSEVTSSPTRKWRIFSRSSSSPFSSNPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGFKPTLLDGSKPDFTSVIPNLALKSTIFNWCRNSSSEPPKPLDFSSAEKLVGKFMADHRKSDDELIQGVAENPVVRFNHSATDVTRRESHFYSSSDQSVAAVPSLPLPLATRPSSSSESEISTLNSTEEEEILAKLKSPQVTEIEEGVVTLRKITRIREDTRLYLCSPLILSALRSLIVSRYSSIQVNSVAALVNLSLENMNKVKIVRSGFLPNLIDILKTGSPEVQEHAAGAIFSLALHDDNKTAIGVLGALPSLIRLLVSHSEQTRHDSALALYHLSQVQSNRSKLVKLGSVPVFLGMVKSGLMVGRIFLILCNLAACFEGRAALLNSGAVECLVGMLRENELDSESTRESCVAVLLELSYSNLRFKGLAKTAGAMEVFMAVEENGSERLQEKVKRMMESMKVREEEAGNVNWEELLDSGSSSSSQTRCRLVAGMDSSMLVRFIHDFDEQGTEQWRYLHFTLDLIIIDHKQSKRGV 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20359053 20361390 - CmoCh04G028560.1 Cmo04g02856 381831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02856 576 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 40 531 - -
Cmo04g02856 576 PANTHER U BOX DOMAIN-CONTAINING 40 531 - -
Cmo04g02856 576 SUPERFAMILY RING/U-box 54 136 - -
Cmo04g02856 576 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Cmo04g02856 576 Gene3D - 216 404 IPR011989 -
Cmo04g02856 576 Gene3D - 407 501 IPR011989 -
Cmo04g02856 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Cmo04g02856 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 349 391 IPR000225 GO:0005515
Cmo04g02856 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 308 345 IPR000225 GO:0005515
Cmo04g02856 576 SUPERFAMILY ARM repeat 228 502 IPR016024 -
Cmo04g02856 576 CDD RING-Ubox 67 102 - -
Cmo04g02856 576 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Cmo04g02856 576 Pfam U-box domain 62 131 IPR003613 GO:0004842|GO:0016567
Cmo04g02856 576 SMART arm_5 418 461 IPR000225 GO:0005515
Cmo04g02856 576 SMART arm_5 256 296 IPR000225 GO:0005515
Cmo04g02856 576 SMART arm_5 297 337 IPR000225 GO:0005515
Cmo04g02856 576 SMART arm_5 338 378 IPR000225 GO:0005515
Cmo04g02856 576 Pfam Armadillo/beta-catenin-like repeat 299 336 IPR000225 GO:0005515
Cmo04g02856 576 Coils Coil 487 507 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02856 Cmo15g00326 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02856 Cmo-Chr4:20359053 Cmo04g00047 Cmo-Chr4:273414 1.26E-36 dispersed
Cmo10g00160 Cmo-Chr10:725771 Cmo04g02856 Cmo-Chr4:20359053 3.49E-164 wgd
Cmo11g00121 Cmo-Chr11:626277 Cmo04g02856 Cmo-Chr4:20359053 2.01E-162 wgd
Cmo13g00931 Cmo-Chr13:8185126 Cmo04g02856 Cmo-Chr4:20359053 1.78E-148 wgd
Cmo15g00326 Cmo-Chr15:1512571 Cmo04g02856 Cmo-Chr4:20359053 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02856 - - cmax:111489531 812.757