Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02857 ATGTCGAGGCCCCAAGTCACCATCACTCTCGGGCGCTCTGGTCAGGTGATAAAGAGAGGAGGTATAGCCTCAGACTTCGCACAATCGAACATTGATTCTGGATCAGAGCCAAGAAGAAAACGGTATCTTGAGAGATCAGCTGATAATGCTGAAGATTTGTTTTCGTCCACGAATAAGAGGCAACGTGGAGATGGCTTTCCCTGGAGTTCAAATGGTGAAAGAAAAGACGCCTACAGAGTTGGTCAAAATGATCTTCGCTTGAAACTTATGCGCAAAAATCAATCCAAGAAATTTGGTAGTGGAGAAGAACACCGGAGGATGAGCTTACACCATCAATTATCAAAAAATTCGCTGGCCTCAACTAGTGGAGATGTATTACATGGTAGGCATGAATTTCGAGGGAGCAATCTTATAAGGCGACCACATGCTGGAGAAAGTGCCGATGATCTATACCTAGAGCAGTCGCAGAGGAAAAGTGCTGTTTCATATGTTGATAGATTGAGAGTTAGATCCCCAGATGGGATCATGAAAAGGTCCATGGGGCTTTCACCACCTAGATACAATGATGAGTTTAGGAGAACCTCATTTATGATGGAAGCTGATCGTTCAAGAGGTGAATGGTTTTTCGAAAACAGCGTTGCTGACAGTTATAGGTCTGTAGACTCTGCACCTGGGAAAATGAAAGCCGCCCTCCCTGTATCTGGCAAGGGAGTTAAGGATATCCCACCAATAAGTGGCAGCATGCAGAGAAGTTCCACAATGGGGGAGGGTTCTCTTTCTGTTGCTGGCTTGTTGAATTCACTTGGTTTGGGGAAATATTCCATTCATTTTCAAGCAGAAGAAATTGATATGACAGCTTTGAGACAGATGGGAGACAAGGATCTTAAAGAGTTGGGGATACCAATGGGACCAAGGAAAAAGATTCTTCTTGCCCTGTTGCCCCGTTCTAAGCAGCGGCCGCCACCACCATTCTCAATTGGACGAGCGTAG 990 45.25 MSRPQVTITLGRSGQVIKRGGIASDFAQSNIDSGSEPRRKRYLERSADNAEDLFSSTNKRQRGDGFPWSSNGERKDAYRVGQNDLRLKLMRKNQSKKFGSGEEHRRMSLHHQLSKNSLASTSGDVLHGRHEFRGSNLIRRPHAGESADDLYLEQSQRKSAVSYVDRLRVRSPDGIMKRSMGLSPPRYNDEFRRTSFMMEADRSRGEWFFENSVADSYRSVDSAPGKMKAALPVSGKGVKDIPPISGSMQRSSTMGEGSLSVAGLLNSLGLGKYSIHFQAEEIDMTALRQMGDKDLKELGIPMGPRKKILLALLPRSKQRPPPPFSIGRA 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20363066 20366486 - CmoCh04G028570.1 Cmo04g02857 381832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02857 329 MobiDBLite consensus disorder prediction 48 80 - -
Cmo04g02857 329 Pfam SAM domain (Sterile alpha motif) 260 312 IPR001660 GO:0005515
Cmo04g02857 329 MobiDBLite consensus disorder prediction 50 65 - -
Cmo04g02857 329 CDD SAM_superfamily 260 312 - -
Cmo04g02857 329 PANTHER - 1 327 - -
Cmo04g02857 329 ProSiteProfiles SAM domain profile. 260 319 IPR001660 GO:0005515
Cmo04g02857 329 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 327 - -
Cmo04g02857 329 MobiDBLite consensus disorder prediction 93 110 - -
Cmo04g02857 329 SUPERFAMILY SAM/Pointed domain 260 315 IPR013761 -
Cmo04g02857 329 Gene3D - 259 322 IPR013761 -
Cmo04g02857 329 SMART SAM_4 254 318 IPR001660 GO:0005515
Cmo04g02857 329 MobiDBLite consensus disorder prediction 93 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02857 - - - csv:101207417 484.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02857 Cmo-Chr4:20363066 Cmo12g00669 Cmo-Chr12:4434742 3.96E-49 dispersed
Cmo08g00222 Cmo-Chr8:1334032 Cmo04g02857 Cmo-Chr4:20363066 1.03E-21 transposed
Cmo15g00324 Cmo-Chr15:1497940 Cmo04g02857 Cmo-Chr4:20363066 7.49E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0641 . . . . . . . Bda07g01570 . Bpe11g01738 . . . . Cmo04g02857 . . . . . Cpe13g00922 Cpe07g00639 . . . . . . . . . . . . . . . Csa05g01723 Chy09g00662 .
Vvi14g1417 . . . Bda13g01664 . Bpe14g00204 . . . . . . . . . . . Bhi06g00476 . . . Hepe02g3128 . Lcy10g1954 . . . . . . . Cone11ag0134 Cone18ag1347 . . Lsi02g01537 Csa05g02928 . . Blo17g00341 . . . . . . . . Cmo04g02857 . . . Car04g02630 Car15g00299 . Cpe01g02364 . . . . . . . . . . . . . . . . Chy09g00311 Cme09g00332
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003022 2 4 1 0 2 0 4 0 0 2 1 0 1 2 2 2 0 3 3 1 2 2 2 1 2 1 2 7 2 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02857 Cmo_Chr04 FPKM 0.665375 0.581672 0.0 0.0 0.233786 0.0 0.0 45.938923 46.078308 42.492561