Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02859 ATGGATTTGAGATCATGTCTCCAAGTGATGTTCATACTTGTCGCCGCCATAGCACCTCACGCCATCATGGCGCGCCATCTTCACATCCACAAGTTGTCTTCGTCTATATTTCCCCAACATCTTGTGGGAAGTGGGAAGGGCCACAACATAGAAGGAATCCACAACGTCAGAGCCTTCCTCCAACGTTATGGTTACTTGAGCACAAATGTGGAGACCAAAGGCAACGTCTTTGATGACAACTTGGAGTTTGCCATTAAGTCATACCAAAAATTCTTCAACCTCAACGTGAGTGGCATTTTGGATGCGGAGACTTTGGAGCTAATGTCACAGCCTCGATGTGGAGTTCCCGACGTGTTCATCAACGAGACGGGCGGAGACGGGAATGGGGACAGGGATCACCCCATAGGACTTCATTACAGTTTTTTCAACGATTTGAAACCGAAATGGTCGGCGTCCAAATACAATCTGAAATACACATTTCTTGGGAGTTTTCCGGAACAGTACAAGAATACAGTGATTCAAGCCATGATCAGCTGGAGTTTTAACAGTGTGTTTGCATTCTCAGAAGGTAGTACGGACAACACAGATGTTAGAATAAGCTTTGAAGTAGGAGACCATGGAGATGGGTCTCCTTTCAAGGACAAAAATGGAGCATTGGCGCATGCTTTTGCGCCTGAAGATGGGAGACTTCACTTCAATGCGCAGCATGCTTGGGCGGATGGAGCTTATCCTGATAAGTTTGACGTGGGGAGTGTGGCATTGCATGAGCTTGGACATATTCTTGGGCTGGGCCACAGCGACATTAGAGACGCCGTCATGTGGCCATCTATGCCTCCTAATTTGAAGAAGGAGCTAAGCAGCGATGATGTTAGTGGAATCTCGGCTTTGTATGATGGAGTTGAGGAAGACTAG 912 47.04 MDLRSCLQVMFILVAAIAPHAIMARHLHIHKLSSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSTNVETKGNVFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPDVFINETGGDGNGDRDHPIGLHYSFFNDLKPKWSASKYNLKYTFLGSFPEQYKNTVIQAMISWSFNSVFAFSEGSTDNTDVRISFEVGDHGDGSPFKDKNGALAHAFAPEDGRLHFNAQHAWADGAYPDKFDVGSVALHELGHILGLGHSDIRDAVMWPSMPPNLKKELSSDDVSGISALYDGVEED 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20371522 20372433 + CmoCh04G028590.1 Cmo04g02859 381834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02859 303 Gene3D Collagenase (Catalytic Domain) 42 301 IPR024079 GO:0008237
Cmo04g02859 303 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 147 298 - -
Cmo04g02859 303 PANTHER METALLOENDOPROTEINASE 2-MMP-LIKE 30 297 - -
Cmo04g02859 303 SUPERFAMILY PGBD-like 46 118 IPR036365 -
Cmo04g02859 303 Pfam Putative peptidoglycan binding domain 51 108 IPR002477 -
Cmo04g02859 303 PANTHER MATRIX METALLOPROTEINASE 30 297 - -
Cmo04g02859 303 Pfam Matrixin 149 297 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Cmo04g02859 303 PRINTS Matrixin signature 108 121 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cmo04g02859 303 PRINTS Matrixin signature 195 223 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cmo04g02859 303 PRINTS Matrixin signature 252 277 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cmo04g02859 303 PRINTS Matrixin signature 285 298 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cmo04g02859 303 ProSitePatterns Matrixins cysteine switch. 111 118 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Cmo04g02859 303 PIRSF MMP_stromelysin 18 303 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cmo04g02859 303 SMART col_5 145 299 IPR006026 GO:0006508|GO:0008237|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02859 - - - cpep:111803987 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02859 Cmo-Chr4:20371522 Cmo04g02864 Cmo-Chr4:20382865 3.34E-178 dispersed
Cmo04g02859 Cmo-Chr4:20371522 Cmo04g02860 Cmo-Chr4:20373775 0 tandem
Cmo15g00322 Cmo-Chr15:1493935 Cmo04g02859 Cmo-Chr4:20371522 4.91E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g791 . . Bda01g02239 Bda11g01250 Bpe13g00477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0625 . . . . . . . Bda11g01250 . . Bma01g00069 Bma06g00637 . Cmo04g02859 . . . . . Cpe13g00923 . . . . . . . . . . . . . . . . Csa05g01725 Chy09g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000100 2 8 2 2 2 9 2 10 10 18 4 10 5 13 10 7 10 5 4 10 17 11 9 13 7 12 10 7 12 3 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02859 Cmo_Chr04 FPKM 33.55714 39.238655 36.847561 35.994282 40.073116 39.091682 42.130024 50.917313 52.642185 57.700111