Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02871 ATGAAAATCTCCTCCAGCTTCCTTCTCTATCATCATCTTCTTCTTCTTCTTCTACTTTCTGCTTCTTTGTCTTCTTCTGCAGTTCAGGAAGACGACATAAGATGTCTTCGAGGGGTTAAGGATTCGCTCGTTGATCCTCTTGGAAAGCTCAGTTCCTGGGATTTCAAGAACACGTCGGTCGGGAATCTTTGCAATAAATTTGTCGGACTGTCTTGCTGGAACGACCGGGAGAATCGCATTCTGAGCCTTGAGCTCAGAGATATGGCGCTCTCTGGTTCCATTTCTGAGGATTTGCAGTACTGTGTGAGCCTGCAGAGACTGGATCTGTCTGGTAATTCCTTTTCCGGTGCGATTCCGCCGCATATTTGTAAGTGGCTTCCGTATTTGGTTAATTTGGATTTGTCCAACAATCAATTTTCCGGCCCTATTCCGGCTGATCTCGCCGGATGTTCTTATCTGAATTCGTTAATGTTGTCTAATAATGCGCTTTCGGGTACGATACCAGTTGAGCTTACGAGTTTGAGTAGGCTTAATAAATTTTCTGTTGCGAACAATCATCTCACTGGTTCGATTCCCGAATCTTTTAATAAATTTGGGAGTGAGGATTTTGATGGGAACAGTGAGTTATGTGGAGGGCCTGTTGGATCGAGCTGTGGTGGGCTGAGCAAGAAAAATCTAGCCATTATTATAGCTGCTGGTGTGTTTGGTGCTGCAGCTTCTCTGTTATTAGGTTTTGGGTTATGGTGGTGGTATCATTCTAGGATGAACATGAAGAAAAGAAGGGGATATAGGGATGGGAGTAATGGGGATTGGGCTGATAGATTAAGAGCCTATAAGCTAGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTGAAAGTTAAGTTAGCTGATTTGTTAACTGCTACGAACAATTTCAATGGTGAAAATATAATGGTTTCTTCTAGAACTGGAACTACATATAGAGCTGCTCTTCCAGATGGCTCTGTGCTTGCTATAAAGCGGCTCAATACCTGCAAGCTTGGTGAGAAGCTGTTTCGGACGGAGATGAACCGGTTAGGATCGTTGAGGCACCCGAATTTGACACCCCTTTTGGGATTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCTAATGGGACTTTGGCTTCTTTGTTACATGGAAATGGTGAGATATTGGATTGGGCAACTAGGTTTAGGATTGGTTTGGGTGCAGCTAGGGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTCATGCATCAAAACATATGTTCTAGTGTAATTCTTGTGGATGATGAGTATGATGCTAGGATCATGGATTTTGGATTGGCAAGGTTAATGGCTTCGGATTCTCACGACAGTAGTTTCGTTAATGGAGATTTAGGGGAGCTCGGTTACATTGCTCCCGAATATCCCAGCACCATGGTTGCTTCTCTAAAAGGGGATGTTTATGGATTTGGGGTTGTGCTTTTGGAGTTGGTCACTGGCCAAAAACCTCTAGAAGTCACGAAAGCAGAGGAAGGCTACAAGGGTAACTTGGTGGATTGGGTTAATCAGCTAAGTAGTTCGGGTCGAATCAAGGACGTTATCGATAAAAGTCTTTGTGGAAAAGGGAACGACGACGAAATCTTACAACTTCTGAAAATTACAATGAACTGCATTGTTTCTAGGCCCAAGGACAGGTGGTCTATGTATCAGGTTTATCAGTCAATGAAATCAATGGCTAAGGACTACAGTTTCTCTGAACCAGACGATGCGTTCCCACTTTTACTCGGCAAGGGAGATAACGAACCCGTGTAG 1815 43.58 MKISSSFLLYHHLLLLLLLSASLSSSAVQEDDIRCLRGVKDSLVDPLGKLSSWDFKNTSVGNLCNKFVGLSCWNDRENRILSLELRDMALSGSISEDLQYCVSLQRLDLSGNSFSGAIPPHICKWLPYLVNLDLSNNQFSGPIPADLAGCSYLNSLMLSNNALSGTIPVELTSLSRLNKFSVANNHLTGSIPESFNKFGSEDFDGNSELCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKKRRGYRDGSNGDWADRLRAYKLVQVSLFQKPLVKVKLADLLTATNNFNGENIMVSSRTGTTYRAALPDGSVLAIKRLNTCKLGEKLFRTEMNRLGSLRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLASLLHGNGEILDWATRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDDEYDARIMDFGLARLMASDSHDSSFVNGDLGELGYIAPEYPSTMVASLKGDVYGFGVVLLELVTGQKPLEVTKAEEGYKGNLVDWVNQLSSSGRIKDVIDKSLCGKGNDDEILQLLKITMNCIVSRPKDRWSMYQVYQSMKSMAKDYSFSEPDDAFPLLLGKGDNEPV 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20430974 20432788 + CmoCh04G028710.1 Cmo04g02871 381846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02871 604 Gene3D Phosphorylase Kinase; domain 1 266 379 - -
Cmo04g02871 604 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
Cmo04g02871 604 ProSiteProfiles Protein kinase domain profile. 305 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02871 604 Gene3D Transferase(Phosphotransferase) domain 1 380 591 - -
Cmo04g02871 604 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 598 - -
Cmo04g02871 604 Gene3D Ribonuclease Inhibitor 29 220 IPR032675 -
Cmo04g02871 604 SUPERFAMILY Protein kinase-like (PK-like) 282 575 IPR011009 -
Cmo04g02871 604 Pfam Leucine Rich Repeat 103 124 IPR001611 GO:0005515
Cmo04g02871 604 Pfam Protein tyrosine and serine/threonine kinase 330 574 IPR001245 GO:0004672|GO:0006468
Cmo04g02871 604 PANTHER RECEPTOR-LIKE PROTEIN 55 7 598 - -
Cmo04g02871 604 SUPERFAMILY L domain-like 29 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02871 Cmo-Chr4:20430974 Cmo18g01258 Cmo-Chr18:12320265 6.50E-06 dispersed
Cmo15g00311 Cmo-Chr15:1452082 Cmo04g02871 Cmo-Chr4:20430974 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74325 PF07714 PK_Tyr_Ser-Thr 1.30E-29 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02871 - - cmos:111445255 1045.03