Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02874 ATGGGACTCTGCGGCTCCAGGCCGGTGGGTTGTGTCGGAGGAAGACTGGTTCCGGCGGGAAAAAGGAATCGGAGGCGGAGACGAAGAAGTATCAAGCGCCGCCCATCATCCCTAAAGCTCGATTCGTCTTCTGTGCATAATCGGCCTCAGTCTACCCCTACATGTGCAGGTAGAGGAAGTGTCGATGCGGCATGGTTTGATTCTACTTCAGTCCTTGATTCGGAATTTGATGACGAGTTTTACAGCTTTCGTGATGATGAGGTTTCCACAGAAAGTGAAAATGGAAAAGGAAGTGAAGCGGTTGAGTTGAACAACTGCGGGCTTCTTCCAAATACTTGTTTGCCATACCTTGCTGCTGGACCCTCAGTTGAAAAAAAGAGACAAATCAACCAAGGAGCCCCAAATTTAAGGAGAAAAGCATCTTCAAAACTCTCATTTAAGTTGAAGGAAGGACACAATGATCCAACGACATTTTCACCAAGGGCGCCTTTACAAAGACCAATAGCAGGCACTTCAGTTCCGCACTGCCCATTAGAAAAGAGAATGCCCAATTGTTGGTCACCTATTGACCCCAGTGTGTTTAAAGTCCGAGGGAAGAACTATTTTAGAGATAAGAAGAAAGAGTTTGCTCGAAATTGTGCTGCATATTATCCCATTGGAGCTGATGTCTTCTTGTCTCAGAGAAAGATTGATCATATTGCCCGTTTTGTGGAACTTCCTGCCATAAATCCAGCTGGAGATGTCCCTTCTATTCTTGTAGTAAATGTTCAGGTACCACTGTACCCTGCTACAATCTTTCAAGGAGAAAATGATGGGGAAGGCATGAGTGTGGTTATGTACTTTAAGCTATCTGAGAGTTATTCGAAGGAACTTCCAAGTTCTTTCCAAGAACATTTTACTAAATTAATTAATGACGAAGTCGAAAGGGTTAGAGGTTTCCCTCTGGATAGCATTGTACCGCTCAGAGAAAGATTGAAAATTATTGGCCGAGCGGCAAATGTGGAGGACCTTCATTTGAGTGCAGCTGAAAGAAAGCTTATGAATGCGTACAACGAAAAACCTGTCCTCTCACGACCTCAACATGAATTTTTCTTGGGGGAGAAATACTTTGAAATCGATTTGGACATGCACAGATTTAGCTATATCTCAAGAAAAGGTTTTGAATCCTTTATTGACAGATTGAAGCTATGTATCTTGGATTTTGGCTTGACAATTCAGGGAAACAAGGCAGAAGACTTGCCAGAACACATGTTATGTTGTATTCGACTGAACGAAATCGATTACTCCACTTATAAATCACTGGGTATTTAA 1311 42.79 MGLCGSRPVGCVGGRLVPAGKRNRRRRRRSIKRRPSSLKLDSSSVHNRPQSTPTCAGRGSVDAAWFDSTSVLDSEFDDEFYSFRDDEVSTESENGKGSEAVELNNCGLLPNTCLPYLAAGPSVEKKRQINQGAPNLRRKASSKLSFKLKEGHNDPTTFSPRAPLQRPIAGTSVPHCPLEKRMPNCWSPIDPSVFKVRGKNYFRDKKKEFARNCAAYYPIGADVFLSQRKIDHIARFVELPAINPAGDVPSILVVNVQVPLYPATIFQGENDGEGMSVVMYFKLSESYSKELPSSFQEHFTKLINDEVERVRGFPLDSIVPLRERLKIIGRAANVEDLHLSAAERKLMNAYNEKPVLSRPQHEFFLGEKYFEIDLDMHRFSYISRKGFESFIDRLKLCILDFGLTIQGNKAEDLPEHMLCCIRLNEIDYSTYKSLGI 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20441819 20445936 + CmoCh04G028740.1 Cmo04g02874 381849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02874 436 MobiDBLite consensus disorder prediction 19 34 - -
Cmo04g02874 436 MobiDBLite consensus disorder prediction 15 57 - -
Cmo04g02874 436 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 186 427 IPR009769 -
Cmo04g02874 436 PANTHER PLANT/F14N23-31 PROTEIN 1 93 - -
Cmo04g02874 436 PANTHER PLANT/F14N23-31 PROTEIN 86 434 - -
Cmo04g02874 436 MobiDBLite consensus disorder prediction 37 57 - -
Cmo04g02874 436 PANTHER CW14 PROTEIN 86 434 - -
Cmo04g02874 436 PANTHER CW14 PROTEIN 1 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02874 - - - csv:101209394 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02874 Cmo-Chr4:20441819 Cmo05g00875 Cmo-Chr5:5891842 1.07E-110 dispersed
Cmo15g00306 Cmo-Chr15:1436243 Cmo04g02874 Cmo-Chr4:20441819 0 wgd
Cmo04g01691 Cmo-Chr4:8582297 Cmo04g02874 Cmo-Chr4:20441819 8.94E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g817 . . . . . . Bma14g01758 . . . . . . . Sed06g1586 . Cpe01g01427 Bhi07g01643 Tan04g1149 Cmetu10g1826 Lac13g0255 Hepe10g1694 . . Cla05g02494 Cam05g2679 Cec05g2713 Cco05g2748 Clacu05g2681 Cmu05g2536 Cre05g2651 Cone13ag0994 . . . . Csa05g02391 Chy10g00953 . . Blo11g00893 . . . . . . . Cmo04g02874 . Cma04g01613 . Car04g01654 . Cpe13g00933 . . . . . . . . . . . . . . . . . Chy09g00284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004043 3 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02874 Cmo_Chr04 FPKM 8.046808 14.284397 29.012556 28.967844 14.425038 14.596592 14.29183 34.915592 40.936203 37.790916