Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02878 ATGGGGGATAAGGATGAAGTTTTGGAGGCTGTTCTGAAAGAAGCTGTTGATTTGGAGAACGTGCCGGTTGAAGAGGTTTTTCAGACTTTGAGGTGTAATACTAATGGTTTGACAACAGAGGCGGCTCGTGAGAGATTGGCCATCTTTGGCTACAATAAGCTTGAAGAAAAGAAGGAGAGTAAGGTTTTGAAGTTCTTGGGATTTATGTGGAACCCTCTTTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTCTAGCCAATGGAGGAGGAAAACCTCCAGATTGGCAAGACTTTGTTGGGATCATAACCTTGTTGCTTATCAATTCAACTATTAGTTTTATTGAGGAGAACAATGCTGGAAACGCCGCAGCTGCGCTCATGGCTCGTCTTGCACCGAAAGCTAAGGTTCTTAGAGATGGGAAGTGGGTTGAGGAGGAAGCATCAGTTCTTGTTCCTGGTGATATAATTAGTGTCAAGCTCGGTGACATTATTCCTGCTGATGCTCGCCTCCTTGAAGGCGATCCGCTGAAGATTGATCAATCTGCACTCACGGGAGAATCGCTACCTGTAACTAAAGGCCCAGGCGACAGCGTCTATTCAGGGTCGACGTGCAAACAGGGAGAAATTGAAGCAGTAGTTATTGCTACTGGTGTTCATACCTTCTTTGGCAAAGCTGCTCATCTTGTGGACTCCACAAACCAAGTGGGTCATTTCCAAAAGGTTTTGACTGCTATTGGAAATTTCTGCATATGTTCCATTGCTGTGGGCATGATTGTGGAGATTATCGTCATGTACCCAATCCAACATCGGGCATATCGTCCCGGGATCGACAATCTCCTTGTTCTTCTCATTGGAGGAATTCCTATTGCTATGCCAACTGTTTTGTCGGTCACGATGGCAATTGGATCACATCGTCTATCTCAACAGGGAGCTATCACGAAACGAATGACGGCAATAGAAGAAATGGCTGGAATGGACGTGCTTTGTAGCGACAAAACAGGAACACTGACGTTAAATAAGCTTACTGTTGATAAGACTCTGATAGAGGTTTTCACCAAGGGAGTGGATGTCGATACCGTTATCCTCATGGCAGCTCAAGCCTCCCGAGTTGAAAATCAGGATGCAATCGATACTGCTATTGTAGGGATGTTGAGTGATCCAAAGGAGGCACGAGCAGGAATTCAAGAGGTTCACTTCCTTCCATTCAACCCAACTGACAAGCGGACTGCTCTGACATACATTGATCGTGATGGGAAAATGCATCGGGTCAGCAAAGGCGCTCCAGAGCAGATATTGAATCTTGCGCACAACAAATCAGAGATAGAAAGGAAAGTCCATGCTATAATCGACAAGTTCGCGGAGCGAGGGTTGCGATCTCTTGCAGTGGCATACCAAGAAGTTCCAGAAGGAAGGAAGGAGAGTCATGGAGGGCCATGGCAGTTCATTGGACTAATGCCTCTGTTTGACCCGCCGAGACATGATAGTGCAGAGACAATTAGGAGGGCTTTGAATCTTGGTGTAAACGTTAAAATGATCACAGGTGATCAACTGGCTATAGGAAAGGAAACGGGACGACGTCTCGGGATGGGAACAAATATGTACCCTTCATCTGCATTATTAGGACAGAACAAAGATGAATCAATTTCTGGATTGCCTGTTGATGACTTAATTGAAAAGGCTGATGGATTTGCGGGCGTTTTTCCTGAGCACAAATATGAGATTGTGAAACGTTTACAAGCTCGAAAACATATATGTGGAATGACTGGAGATGGTGTTAATGATGCTCCTGCACTTAAAAAGGCCGATATTGGCATAGCAGTTGCAGATGCAACCGACGCAGCTCGTAGCGCTTCTGATATTGTTCTTACAGAGCCTGGTCTTAGTGTTATCATAAGCGCTGTTCTAACCAGCAGAGCCATCTTCCAGAGGATGAAAAATTACACGATTTATGCAGTTTCAATTACGATCCGTATTGTGCTTGGATTCATGTTGCTGGCCCTAATATATCAATTTGACTTCCCACCTTTCATGGTCCTGATCATTGCTATCCTCAATGATGGTACCATAATGACAATATCAAAGGATAGAGTGAAACCTTCTCCTCTGCCAGATAGCTGGAAACTGGCGGAGATTTTTGGCACTGGAATTATTCTTGGAGGTTATTTGGCTATGATGACCGTTATTTTCTTCTGGGCGGCTTACAGAACTGACTTCTTTCCTCGTACATTTGGGGTTTCTAGCCTTCAGAAGAAGGATGAGGATGATTTCAGAAAGCTAGCTTCAGCAATATACCTGCAAGTGAGTACAATTAGTCAGGCTCTCATCTTTGTTACACGATCTCGGAGTTGGTCGTTTGTGGAGCGGCCTGGACTGTTATTGGTTGCAGCTTTTATTGTTGCTCAGCTGATTGCTACACTGATTGCTGTCTATGCAAACTGGAGTTTTGCTGCAATAGAAGGAATTGGCTGGGGCTGGGCTGGTGTGGTTTGGCTTTACAACCTCGTCTTTTATTTCCCACTTGACATAATCAAGTTTGCAATCAGATATGCCATTAGTGGTAGGGCATGGGACCTTGTCATTGAACAAAGGATTGCCTTTACAAGGAAGAAGGATTTCGGGAAGGAAGAGCGTGAGCTCAAATGGGCCCATGCGCAAAGGACACTTCATGGGCTGCAGCCACCTGAGGCTAAGATGTTTTCTGAGCGCACAACTTATACAGAACTCAATCAAATGGCTGAAGAAGCAAAACGACGAGCTGAAATTGCAAGGCTGAGAGAGCTGCACACATTGAAAGGTCACGTTGAATCAGTGGTGAGGTTGAAGGGTCTTGATATCAACACAATTCAGCAGTCATACACAGTATAG 2871 44.93 MGDKDEVLEAVLKEAVDLENVPVEEVFQTLRCNTNGLTTEAARERLAIFGYNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWVEEEASVLVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFTKGVDVDTVILMAAQASRVENQDAIDTAIVGMLSDPKEARAGIQEVHFLPFNPTDKRTALTYIDRDGKMHRVSKGAPEQILNLAHNKSEIERKVHAIIDKFAERGLRSLAVAYQEVPEGRKESHGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESISGLPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFGTGIILGGYLAMMTVIFFWAAYRTDFFPRTFGVSSLQKKDEDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFIVAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLVFYFPLDIIKFAIRYAISGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPEAKMFSERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTIQQSYTV 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20497410 20503852 + CmoCh04G028780.1 Cmo04g02878 381853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02878 956 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Cmo04g02878 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 565 673 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g02878 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 538 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g02878 956 CDD P-type_ATPase_H 36 847 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo04g02878 956 Pfam E1-E2 ATPase 132 310 - -
Cmo04g02878 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 852 IPR023298 -
Cmo04g02878 956 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Cmo04g02878 956 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g02878 956 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g02878 956 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g02878 956 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g02878 956 PRINTS H+-transporting ATPase (proton pump) signature 766 787 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g02878 956 PANTHER CALCIUM-TRANSPORTING ATPASE 3 936 - -
Cmo04g02878 956 Gene3D - 905 956 - -
Cmo04g02878 956 PANTHER PLASMA MEMBRANE ATPASE 3 936 - -
Cmo04g02878 956 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Cmo04g02878 956 Gene3D - 328 627 IPR023214 -
Cmo04g02878 956 Gene3D - 134 218 - -
Cmo04g02878 956 SFLD Haloacid Dehalogenase 313 641 - -
Cmo04g02878 956 Coils Coil 907 927 - -
Cmo04g02878 956 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Cmo04g02878 956 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Cmo04g02878 956 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Cmo04g02878 956 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Cmo04g02878 956 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Cmo04g02878 956 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Cmo04g02878 956 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Cmo04g02878 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Cmo04g02878 956 Gene3D - 343 490 IPR023299 GO:0000166
Cmo04g02878 956 Gene3D - 96 821 - -
Cmo04g02878 956 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 812 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo04g02878 956 SUPERFAMILY HAD-like 327 637 IPR036412 -
Cmo04g02878 956 SFLD p-type atpase 313 641 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02878 Cmo-Chr4:20497410 Cmo10g00189 Cmo-Chr10:861870 0 dispersed
Cmo11g00144 Cmo-Chr11:724695 Cmo04g02878 Cmo-Chr4:20497410 0 wgd
Cmo13g00952 Cmo-Chr13:8289327 Cmo04g02878 Cmo-Chr4:20497410 0 wgd
Cmo18g00101 Cmo-Chr18:691667 Cmo04g02878 Cmo-Chr4:20497410 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02878 K01535 - csv:101211115 1770.75