Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02878 | ATGGGGGATAAGGATGAAGTTTTGGAGGCTGTTCTGAAAGAAGCTGTTGATTTGGAGAACGTGCCGGTTGAAGAGGTTTTTCAGACTTTGAGGTGTAATACTAATGGTTTGACAACAGAGGCGGCTCGTGAGAGATTGGCCATCTTTGGCTACAATAAGCTTGAAGAAAAGAAGGAGAGTAAGGTTTTGAAGTTCTTGGGATTTATGTGGAACCCTCTTTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTCTAGCCAATGGAGGAGGAAAACCTCCAGATTGGCAAGACTTTGTTGGGATCATAACCTTGTTGCTTATCAATTCAACTATTAGTTTTATTGAGGAGAACAATGCTGGAAACGCCGCAGCTGCGCTCATGGCTCGTCTTGCACCGAAAGCTAAGGTTCTTAGAGATGGGAAGTGGGTTGAGGAGGAAGCATCAGTTCTTGTTCCTGGTGATATAATTAGTGTCAAGCTCGGTGACATTATTCCTGCTGATGCTCGCCTCCTTGAAGGCGATCCGCTGAAGATTGATCAATCTGCACTCACGGGAGAATCGCTACCTGTAACTAAAGGCCCAGGCGACAGCGTCTATTCAGGGTCGACGTGCAAACAGGGAGAAATTGAAGCAGTAGTTATTGCTACTGGTGTTCATACCTTCTTTGGCAAAGCTGCTCATCTTGTGGACTCCACAAACCAAGTGGGTCATTTCCAAAAGGTTTTGACTGCTATTGGAAATTTCTGCATATGTTCCATTGCTGTGGGCATGATTGTGGAGATTATCGTCATGTACCCAATCCAACATCGGGCATATCGTCCCGGGATCGACAATCTCCTTGTTCTTCTCATTGGAGGAATTCCTATTGCTATGCCAACTGTTTTGTCGGTCACGATGGCAATTGGATCACATCGTCTATCTCAACAGGGAGCTATCACGAAACGAATGACGGCAATAGAAGAAATGGCTGGAATGGACGTGCTTTGTAGCGACAAAACAGGAACACTGACGTTAAATAAGCTTACTGTTGATAAGACTCTGATAGAGGTTTTCACCAAGGGAGTGGATGTCGATACCGTTATCCTCATGGCAGCTCAAGCCTCCCGAGTTGAAAATCAGGATGCAATCGATACTGCTATTGTAGGGATGTTGAGTGATCCAAAGGAGGCACGAGCAGGAATTCAAGAGGTTCACTTCCTTCCATTCAACCCAACTGACAAGCGGACTGCTCTGACATACATTGATCGTGATGGGAAAATGCATCGGGTCAGCAAAGGCGCTCCAGAGCAGATATTGAATCTTGCGCACAACAAATCAGAGATAGAAAGGAAAGTCCATGCTATAATCGACAAGTTCGCGGAGCGAGGGTTGCGATCTCTTGCAGTGGCATACCAAGAAGTTCCAGAAGGAAGGAAGGAGAGTCATGGAGGGCCATGGCAGTTCATTGGACTAATGCCTCTGTTTGACCCGCCGAGACATGATAGTGCAGAGACAATTAGGAGGGCTTTGAATCTTGGTGTAAACGTTAAAATGATCACAGGTGATCAACTGGCTATAGGAAAGGAAACGGGACGACGTCTCGGGATGGGAACAAATATGTACCCTTCATCTGCATTATTAGGACAGAACAAAGATGAATCAATTTCTGGATTGCCTGTTGATGACTTAATTGAAAAGGCTGATGGATTTGCGGGCGTTTTTCCTGAGCACAAATATGAGATTGTGAAACGTTTACAAGCTCGAAAACATATATGTGGAATGACTGGAGATGGTGTTAATGATGCTCCTGCACTTAAAAAGGCCGATATTGGCATAGCAGTTGCAGATGCAACCGACGCAGCTCGTAGCGCTTCTGATATTGTTCTTACAGAGCCTGGTCTTAGTGTTATCATAAGCGCTGTTCTAACCAGCAGAGCCATCTTCCAGAGGATGAAAAATTACACGATTTATGCAGTTTCAATTACGATCCGTATTGTGCTTGGATTCATGTTGCTGGCCCTAATATATCAATTTGACTTCCCACCTTTCATGGTCCTGATCATTGCTATCCTCAATGATGGTACCATAATGACAATATCAAAGGATAGAGTGAAACCTTCTCCTCTGCCAGATAGCTGGAAACTGGCGGAGATTTTTGGCACTGGAATTATTCTTGGAGGTTATTTGGCTATGATGACCGTTATTTTCTTCTGGGCGGCTTACAGAACTGACTTCTTTCCTCGTACATTTGGGGTTTCTAGCCTTCAGAAGAAGGATGAGGATGATTTCAGAAAGCTAGCTTCAGCAATATACCTGCAAGTGAGTACAATTAGTCAGGCTCTCATCTTTGTTACACGATCTCGGAGTTGGTCGTTTGTGGAGCGGCCTGGACTGTTATTGGTTGCAGCTTTTATTGTTGCTCAGCTGATTGCTACACTGATTGCTGTCTATGCAAACTGGAGTTTTGCTGCAATAGAAGGAATTGGCTGGGGCTGGGCTGGTGTGGTTTGGCTTTACAACCTCGTCTTTTATTTCCCACTTGACATAATCAAGTTTGCAATCAGATATGCCATTAGTGGTAGGGCATGGGACCTTGTCATTGAACAAAGGATTGCCTTTACAAGGAAGAAGGATTTCGGGAAGGAAGAGCGTGAGCTCAAATGGGCCCATGCGCAAAGGACACTTCATGGGCTGCAGCCACCTGAGGCTAAGATGTTTTCTGAGCGCACAACTTATACAGAACTCAATCAAATGGCTGAAGAAGCAAAACGACGAGCTGAAATTGCAAGGCTGAGAGAGCTGCACACATTGAAAGGTCACGTTGAATCAGTGGTGAGGTTGAAGGGTCTTGATATCAACACAATTCAGCAGTCATACACAGTATAG | 2871 | 44.93 | MGDKDEVLEAVLKEAVDLENVPVEEVFQTLRCNTNGLTTEAARERLAIFGYNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWVEEEASVLVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFTKGVDVDTVILMAAQASRVENQDAIDTAIVGMLSDPKEARAGIQEVHFLPFNPTDKRTALTYIDRDGKMHRVSKGAPEQILNLAHNKSEIERKVHAIIDKFAERGLRSLAVAYQEVPEGRKESHGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESISGLPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFGTGIILGGYLAMMTVIFFWAAYRTDFFPRTFGVSSLQKKDEDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFIVAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLVFYFPLDIIKFAIRYAISGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPEAKMFSERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTIQQSYTV | 956 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 20497410 | 20503852 | + | CmoCh04G028780.1 | Cmo04g02878 | 381853 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02878 | 956 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
Cmo04g02878 | 956 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 565 | 673 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo04g02878 | 956 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 103 | 538 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo04g02878 | 956 | CDD | P-type_ATPase_H | 36 | 847 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Cmo04g02878 | 956 | Pfam | E1-E2 ATPase | 132 | 310 | - | - | |
Cmo04g02878 | 956 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 852 | IPR023298 | - | |
Cmo04g02878 | 956 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
Cmo04g02878 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 447 | 465 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo04g02878 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 562 | 578 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo04g02878 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 590 | 606 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo04g02878 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 621 | 646 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo04g02878 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 766 | 787 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo04g02878 | 956 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 936 | - | - | |
Cmo04g02878 | 956 | Gene3D | - | 905 | 956 | - | - | |
Cmo04g02878 | 956 | PANTHER | PLASMA MEMBRANE ATPASE | 3 | 936 | - | - | |
Cmo04g02878 | 956 | SUPERFAMILY | Calcium ATPase, transduction domain A | 134 | 231 | IPR008250 | - | |
Cmo04g02878 | 956 | Gene3D | - | 328 | 627 | IPR023214 | - | |
Cmo04g02878 | 956 | Gene3D | - | 134 | 218 | - | - | |
Cmo04g02878 | 956 | SFLD | Haloacid Dehalogenase | 313 | 641 | - | - | |
Cmo04g02878 | 956 | Coils | Coil | 907 | 927 | - | - | |
Cmo04g02878 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 181 | 195 | - | - | |
Cmo04g02878 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 331 | 345 | - | - | |
Cmo04g02878 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 485 | 496 | - | - | |
Cmo04g02878 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 507 | 517 | - | - | |
Cmo04g02878 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 590 | 609 | - | - | |
Cmo04g02878 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 613 | 625 | - | - | |
Cmo04g02878 | 956 | Pfam | haloacid dehalogenase-like hydrolase | 327 | 604 | - | - | |
Cmo04g02878 | 956 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 333 | 339 | IPR018303 | - | |
Cmo04g02878 | 956 | Gene3D | - | 343 | 490 | IPR023299 | GO:0000166 | |
Cmo04g02878 | 956 | Gene3D | - | 96 | 821 | - | - | |
Cmo04g02878 | 956 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 36 | 812 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Cmo04g02878 | 956 | SUPERFAMILY | HAD-like | 327 | 637 | IPR036412 | - | |
Cmo04g02878 | 956 | SFLD | p-type atpase | 313 | 641 | IPR044492 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02878 | Cmo-Chr4:20497410 | Cmo10g00189 | Cmo-Chr10:861870 | 0 | dispersed | |
Cmo11g00144 | Cmo-Chr11:724695 | Cmo04g02878 | Cmo-Chr4:20497410 | 0 | wgd | |
Cmo13g00952 | Cmo-Chr13:8289327 | Cmo04g02878 | Cmo-Chr4:20497410 | 0 | wgd | |
Cmo18g00101 | Cmo-Chr18:691667 | Cmo04g02878 | Cmo-Chr4:20497410 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02878 | K01535 | - | csv:101211115 | 1770.75 |