Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02882 ATGGGTTTGGCACCTAATGGCTCGAAGGTCGAGACGTGGATTGAGGGCAAGTCAAGAACAGCTAGCGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAAACGAGTTGGAGAAGGAGGAGACTGGATGTTGGGTTAGGTTGAAGTTCATTAGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTTTAAGTGGATCAAAGGTCGATAGCTTCATTAGTGGCACCACTACCCATTGCGATAGTAAATCTAAACTCGATGAAAAGAAAGTTATTCTGTTTACTGCATTGGGGTCATCAGCGACAACTGATAATGCTGAAAGTAGCTCGTCCACGCCCAAGCTTAGTGCCGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACAAGAAATTTCAGACCTGAGAGCCTTCTTGGCGAGGGGGGTTTTGGTTGTGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCGGGAACTGGGCTTACAGTTGCAGTCAAGACTCTTAATCATGACGGTCTACAAGGTCATAAAGAGTGGATGGCTGAAGTTAACTTCCTTGGTGATCTCAACCATTCTAATCTTGTGAGATTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTATTAGTTTACGAGTTCATGCCTCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGCCCTTGCCACTTCCTTGGTCCATTAGAATGAAGATTGCACTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGGAAGACCGGTGATATATCGCGATTTTAAAACGTCTAATATTTTATTAGATGCGGATTACAACGCTAAACTCTCGGATTTTGGACTTGCAAAAGATGGTCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACCTATGGTTACGCAGCTCCAGAATATGTGATGACTGGTAGTTTTGGAGTTGTCTTGCTCGAAATGCTAACGGGTCGAAGATCAATGGATAAAAATAGACCGAATGGGGAGCACAACCTTGTGGAATGGGCTAGACCCCTACTTGTAGACAAGAGGAAGTTCTACCGGCTGATAGATCCCCGCCTTGAATGTCACTTCTCGATCAAAGGTGCACAAAAAGCTGCGGAACTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGTCAGACCTGTGATGAGTGAAGTGGTTGAAACTTTAAAACCTTTGCCAAACCTCAAGGACATGGCTAGTTCTTCCTATTACTTCCAAACCATGCAAGCAGACCGTGCCAGGTCCAATCCCAATGCTAAAAGTGTCGTTCGTACCCAGTCGATGTTGGTGGCAAGGAACGGGCAGCACATTAGAAGCTTATCAAGTCCAAATGGTCCTCATGCTTCTCCATATAATTATCCTCAGCAGTCACCAAAACCTGACAGGAGACAACCCCAATAA 1470 44.63 MGLAPNGSKVETWIEGKSRTASEKKKKKKKKKENELEKEETGCWVRLKFIRSCIPSRSKVDSSLSGSKVDSFISGTTTHCDSKSKLDEKKVILFTALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSIRMKIALGAAKGLAFLHEEAGRPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLVDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKVRPVMSEVVETLKPLPNLKDMASSSYYFQTMQADRARSNPNAKSVVRTQSMLVARNGQHIRSLSSPNGPHASPYNYPQQSPKPDRRQPQ 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20514478 20518173 + CmoCh04G028820.1 Cmo04g02882 381857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02882 489 SUPERFAMILY Protein kinase-like (PK-like) 117 412 IPR011009 -
Cmo04g02882 489 Gene3D Transferase(Phosphotransferase) domain 1 226 436 - -
Cmo04g02882 489 MobiDBLite consensus disorder prediction 456 489 - -
Cmo04g02882 489 PANTHER OS01G0588500 PROTEIN-RELATED 70 479 - -
Cmo04g02882 489 ProSiteProfiles Protein kinase domain profile. 140 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02882 489 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 70 479 - -
Cmo04g02882 489 MobiDBLite consensus disorder prediction 456 482 - -
Cmo04g02882 489 ProSitePatterns Protein kinases ATP-binding region signature. 146 178 IPR017441 GO:0005524
Cmo04g02882 489 Coils Coil 19 42 - -
Cmo04g02882 489 MobiDBLite consensus disorder prediction 1 38 - -
Cmo04g02882 489 Gene3D Phosphorylase Kinase; domain 1 115 225 - -
Cmo04g02882 489 Pfam Protein kinase domain 143 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02882 489 CDD STKc_IRAK 146 415 - -
Cmo04g02882 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02882 Cmo18g01199 CCT
Cmo04g01710 Cmo04g02882 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02882 Cmo-Chr4:20514478 Cmo11g00526 Cmo-Chr11:2569011 1.14E-166 dispersed
Cmo15g00299 Cmo-Chr15:1402587 Cmo04g02882 Cmo-Chr4:20514478 0 wgd
Cmo18g01199 Cmo-Chr18:11991198 Cmo04g02882 Cmo-Chr4:20514478 0 wgd
Cmo04g01710 Cmo-Chr4:8664886 Cmo04g02882 Cmo-Chr4:20514478 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74326 PF00069 Pkinase 1.30E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02882 - - cmos:111462942 960.288