Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02884 ATGGCTTCCCCTCATCATTCCCATAGCTTCATGTTCCAATCACGCCCCGCCGACCACCACGACTACGCCCCCACTGCTTCCTTCAACAACATCCCCCTCTGCCCTCCTCACCTCTACTTCCACGATGGGGTTGTCCCGTTGATGATGAAGAGATCCATGTCGTTTTCCGAAAACGGCTGCGAGGAAGTTAACGGAGACGAGGGGTTGTCGGACGACGGGTCGGCATTGGGAGAGAAAAAGAAGCGGCTTAATTTAGAGCAAGTGAAGGCTTTGGAGAAAAGCTTTGAGCTGGGAAATAAGCTCGAGCCTGAGCGAAAATTGCAGCTGGCTAAAGCTCTTGGGCTGCAGCCGAGACAGATTGCTATTTGGTTCCAAAACAGAAGAGCCAGGTGGAAGACCAAGCAATTGGAGAGAGATTATGACGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCCGACAATGATGTCCTTCAAGCTCAAAATACCAAACTCCATGCACAGTTGCTAGCATTAAAAACTAAAGACTCCGGCGAGGTAGCGGCGGGCGGCAGCGCCACCGTGAACTTAAAGAAAGAAAACGAACGCTGTTGGAGTAGTGACAATAGTTGTGACATCAACCTGGAGATCTCAAGAACACAAGCACCAATAACAAGTAACGGTAGCAGCGGCGGTAGAGGATGTTCCCAACCTGGAATCAAGGACCTGTTCCCGTCGGCAGCGTTCCGGTCCGCCGCCATTACGCAGCTCCTGCAACACGGGTCTTCTAGATCGACGGTCAATCATTCGCCCGTGATTCAAGAAGAAAGCTTCACTCAAATGTTCAATGGAATGGAAGCACAACCACAAACTACGGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 903 49.94 MASPHHSHSFMFQSRPADHHDYAPTASFNNIPLCPPHLYFHDGVVPLMMKRSMSFSENGCEEVNGDEGLSDDGSALGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDVLKKQFEALKADNDVLQAQNTKLHAQLLALKTKDSGEVAAGGSATVNLKKENERCWSSDNSCDINLEISRTQAPITSNGSSGGRGCSQPGIKDLFPSAAFRSAAITQLLQHGSSRSTVNHSPVIQEESFTQMFNGMEAQPQTTAAGFWPWSSDQNSHFH 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20528681 20529969 - CmoCh04G028840.1 Cmo04g02884 381859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02884 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 1 300 - -
Cmo04g02884 300 Pfam Homeobox associated leucine zipper 134 174 IPR003106 GO:0006355|GO:0043565
Cmo04g02884 300 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Cmo04g02884 300 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Cmo04g02884 300 Coils Coil 126 167 - -
Cmo04g02884 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 300 IPR045224 GO:0003700
Cmo04g02884 300 Gene3D - 72 141 - -
Cmo04g02884 300 CDD homeodomain 79 135 IPR001356 GO:0003677
Cmo04g02884 300 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Cmo04g02884 300 SUPERFAMILY Homeodomain-like 72 136 IPR009057 -
Cmo04g02884 300 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Cmo04g02884 300 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Cmo04g02884 300 SMART HOX_1 77 138 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02884 Cmo18g01188 CCT
Cmo04g01722 Cmo04g02884 CCT
Cmo04g01722 Cmo04g02884 ECH
Cmo04g02884 Cmo18g01188 ECH
Cmo04g02884 Cmo04g01722 ECH
Cmo04g02884 Cmo15g00296 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02884 Cmo-Chr4:20528681 Cmo15g00296 Cmo-Chr15:1395440 9.02E-180 dispersed
Cmo06g00428 Cmo-Chr6:2055143 Cmo04g02884 Cmo-Chr4:20528681 5.25E-30 dispersed
Cmo13g00956 Cmo-Chr13:8306478 Cmo04g02884 Cmo-Chr4:20528681 2.96E-35 wgd
Cmo18g01188 Cmo-Chr18:11928384 Cmo04g02884 Cmo-Chr4:20528681 2.30E-80 wgd
Cmo18g00098 Cmo-Chr18:676252 Cmo04g02884 Cmo-Chr4:20528681 4.31E-34 wgd
Cmo04g01722 Cmo-Chr4:8724214 Cmo04g02884 Cmo-Chr4:20528681 1.37E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9743 PF00046 Homeodomain 4.60E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02884 K09338 - csv:101212093 523.087