Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02886 ATGTCGGCTAAGTTTTCAGATTTCAGATTTCCGCTCGGCCCCCTCTCGTCTTCTTCTCTCAGAGCTTCTATCAGTTACCCCTTTGCTGAACAACTCTGGGACTTCCACATAGAGCTGGGTGGAACAATGTACTCTGGGGGCTATACTGCTGAAGTTACAAGTTTGTCACCTAAAGCCACGGAGAATGATGTTTATGATTTTTTCTCCCATTGTGGCGCGGTGGATCATGTAGAAATCCTCAGGTCGGGTGATTATGCGTGTACTGCTTATGTGACTTTCCGTGATGCTTTTGCTCTGGAAACTGCTATATTGCTTAGTGGGGCTGAAATCTTAGATCAATGTGTGTTCATAGGCCGGTGGGGAACATACACAGATGAGTCATACAACTGGAACAACCCTTCACAAATGACCGACAACAATACGAGCCCAATGGTTGCAGAAATCATGCATTCTGCATACACACCAGGGGAGGCTGTAACCGTGGCTCAACAAGTTGTCAAAACAATGCTATCAAAGGGATATGTTTTAACCAAAGATGCACTTGTAAAGGCTAAAGCTTTTGATGATTCTTGTCAAGTCTCAGCTTCTGCAGCAGCCAAAGTTTCTGAGCTTAGCAACAGGATTGGACTCACTGATGCAATTCATACCGGCATGGAAACTGTTAAATACATCGATGAGAAGTATCACGTTTCCGATATCACCCGATCGACTGCAATGGTTACTGGAACGGCGGCCGTGGTGGCAATGGGGGTGGCGGGAAAAGCGGCGATGGCTGCAGGTACGGCTGTAGTAAACAGCAGTTACTTTTCAAAGGGCGCGCTTTGGGTTTCGGATATGTTGAGCCGTGCTTCTAAGGCTGCAGCTGAAGTAGGTACGAGGAACAGTAAAGGAATAACAAAACTTTGA 906 46.36 MSAKFSDFRFPLGPLSSSSLRASISYPFAEQLWDFHIELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20540974 20543906 - CmoCh04G028860.1 Cmo04g02886 381861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02886 301 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 43 296 - -
Cmo04g02886 301 SMART rrm1_1 49 118 IPR000504 GO:0003723
Cmo04g02886 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 112 IPR000504 GO:0003723
Cmo04g02886 301 SUPERFAMILY RNA-binding domain, RBD 50 120 IPR035979 GO:0003676
Cmo04g02886 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 119 IPR000504 GO:0003723
Cmo04g02886 301 Gene3D - 48 117 IPR012677 -
Cmo04g02886 301 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 43 296 - -
Cmo04g02886 301 CDD RRM_Vip1_like 51 117 IPR034360 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02886 - - - cmax:111487859 477.633
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01723 Cmo04g02886 CCT
Cmo04g02886 Cmo18g01187 CCT
Cmo04g02886 Cmo18g01187 ECH
Cmo04g02886 Cmo04g01723 ECH
Cmo04g01723 Cmo04g02886 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02886 Cmo-Chr4:20540974 Cmo16g01227 Cmo-Chr16:8790149 7.54E-39 dispersed
Cmo18g01187 Cmo-Chr18:11918942 Cmo04g02886 Cmo-Chr4:20540974 2.83E-86 wgd
Cmo04g01723 Cmo-Chr4:8731610 Cmo04g02886 Cmo-Chr4:20540974 1.22E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
Vvi14g1513 . . . . . . . . . . . . . . . . . Bhi06g00413 Tan11g0526 . . Hepe02g3159 . Lcy10g1998 . . . . . . . . . Cone2ag0186 Cone16ag0857 Lsi02g01493 Csa05g02433 . . . . . . . Bpe11g01634 . . . Cmo04g02886 . Cma04g02758 . . . . Cpe01g02385 . . . . . . . Cla09g01791 Cam09g1881 Cec09g1945 Cco09g2037 . . Cre01g0626 . . Chy09g00263 Cme09g00286
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02886 Cmo_Chr04 FPKM 9.529915 16.309208 5.763474 8.23242 30.309538 20.597137 21.649683 17.699472 14.004433 17.710823