Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02889 ATGACCTCCGCCGAGGCTTCAATCAAGCCCAATTCTGCATCCGCTTTCAAGAACCTTGCTGATTCTACCAAAGCCCCCTCTGATCCACCCAACGCGCTCTCTGCCAAGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTTGTTTCTGTCCCTCGTGAAAACGAGCGTGTCTTCTACTTCCCTCAGGGCCACATTGAACAGGTGGAAGCATCAACTAATCAAGTGGCGGACCAACAGATGCCTGTTTATGACCTTCCATCCAAAATCCTCTGCCGCATTATTAATGTGTGCTTAAAGGCAGAGCCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATTCTGTGGACAAGGAACCACCTCCTCCTCCTCCACGAAGATTTCATGTGCATTCTTTTTGCAAGACTCTGACTGCATCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGGCGCCATGCTGATGAATGTCTTCCTCCTCTGGACATGTCACAACAGCCTCCTACTCAGGAGTTAGTTGCAAAGGATTTGCTTGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGAGAGAATAGAGAACTTCGCGTTGGTGTTAGGCGTGCCATGAGACAACATGGCAATGTCCCCTCATCGGTCATATCTAGCCATAGTATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCCATTTCCACAGGCACAATGTTCACTGTGTACTATAAGCCTAGGACAAGCCCTTCTGAATTTGTTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGGACGAGGTTCAAAATGAGATTTGAAGGTGAAGAAGCTCCTGAACAGAGATTCACGGGTACTGTCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGGTGGGATGAGACATCTACTATTTCTCGTCCGGAGAAAGTCTCTCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCAGCACTGAACCCCCTTCCGATGACTAGACCTAAAAGGCATCGATCAAACATGGTGCCTACATCCCCTGATTCCTCTGTTCTTACACGAGAGGGCCCATCAAGAATGATTATAGACCATTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACTTTGAGAGGGAATTTAATTGATGGCAACGAGTCTGATACTGCTGAAAAATCTGTTATGTGGTCTCCATCACTAGATGATGAGAAGATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGACAGTTGGATGCCTGCAGGAAGTGGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAGCTAATATTGATTCATCCTGTGGTGTCCGAGCTACCTTGGGAGATCCAGCAATAGTAACTGCTAATTCAATCAGAAAGCATGCAGTGTATCAAGATGGAAAGTTTAACTTCCTTGGTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTTTCACTTAACCTGGTCGACTCTAGTCAGAAGGCTCATATTCAGGCTGGTGACTTGCCTTATCAAATGAGAGGAAATGCCACCTTTAATGGCGTTGGTGATCATTCTATGGCTCAATGTTATAGAATTGATCATTCTATGGCCCATTGTTATAGAATTGAACAGCCTAATGGAAACTGGTCGATGCCTCCACCTTCATCTCATTTTGATTATCCAGTTCATTCAACTGAACTGACTTCGAAACCTATGCTATTTCAGAACCAAGATATTTTGAATCTCAAAGATGGAAATTGTAAGCTTTTTGGCATCTCACTCGTAAAAAATCCTGCTATTTCAGACCCTGCAGAATTGCATAGAAATGTGATGAACGAGGCAGATGTTATACATCCTAATAGACATCCGATCCATTTGAATGAGTCTGAACTGTCTAGGGGTTCAAATTTGGCTGATAAATCCCTTGCCATCAACGTGGCTGATAAGTTGCAGCAAGCATGCACACCAAACTTGAAGGATTCTCAGAGCAAATCACAGGGTTCTTCAACAAGGAGCTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAAGTTCAACAATTATGATGAATTGATTGCTGAATTGGACCAATTGTTTGAATTTGGTGGCGAGCTTCTGCCTCCCAAAAAGAGTTGGCTTGTTGTATATACGGATGATGAAGGCGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTACACAAGAGAAGAGGTCCAGAAGATGAATCCAAGATCCTTAACACTGAAAGGTGATGAGAATCCATCTGTTGAAGGGGAAGAAGCAAAAGAGATTAAAAGTCCGGCAGTACCTTCAATGTCAGCACCAGAGAGTTAG 2571 44.77 MTSAEASIKPNSASAFKNLADSTKAPSDPPNALSAKDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRIINVCLKAEPDTDEVFAQITLLPEANQDEDSVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPTQELVAKDLLGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENRELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFVVPYDQYMESIKKSYTIGTRFKMRFEGEEAPEQRFTGTVIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRHRSNMVPTSPDSSVLTREGPSRMIIDHSPASAFTRVLQGQEFSTLRGNLIDGNESDTAEKSVMWSPSLDDEKIDVVSTSKKHGADSWMPAGSGEPTYADLLSGFGANIDSSCGVRATLGDPAIVTANSIRKHAVYQDGKFNFLGGGSSWSVLPSGLSLNLVDSSQKAHIQAGDLPYQMRGNATFNGVGDHSMAQCYRIDHSMAHCYRIEQPNGNWSMPPPSSHFDYPVHSTELTSKPMLFQNQDILNLKDGNCKLFGISLVKNPAISDPAELHRNVMNEADVIHPNRHPIHLNESELSRGSNLADKSLAINVADKLQQACTPNLKDSQSKSQGSSTRSCTKVHKQGIALGRSVDLSKFNNYDELIAELDQLFEFGGELLPPKKSWLVVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPRSLTLKGDENPSVEGEEAKEIKSPAVPSMSAPES 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20561953 20567175 + CmoCh04G028890.1 Cmo04g02889 381864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02889 856 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Cmo04g02889 856 ProSiteProfiles PB1 domain profile. 732 816 IPR000270 GO:0005515
Cmo04g02889 856 Gene3D - 145 250 IPR015300 -
Cmo04g02889 856 SUPERFAMILY DNA-binding pseudobarrel domain 145 277 IPR015300 -
Cmo04g02889 856 CDD B3_DNA 146 248 IPR003340 GO:0003677
Cmo04g02889 856 SUPERFAMILY CAD & PB1 domains 723 809 - -
Cmo04g02889 856 MobiDBLite consensus disorder prediction 397 411 - -
Cmo04g02889 856 Pfam AUX/IAA family 718 768 IPR033389 -
Cmo04g02889 856 Pfam AUX/IAA family 779 823 IPR033389 -
Cmo04g02889 856 SMART B3_2 148 250 IPR003340 GO:0003677
Cmo04g02889 856 MobiDBLite consensus disorder prediction 821 856 - -
Cmo04g02889 856 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Cmo04g02889 856 Gene3D - 728 821 - -
Cmo04g02889 856 MobiDBLite consensus disorder prediction 382 412 - -
Cmo04g02889 856 Gene3D - 311 381 - -
Cmo04g02889 856 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo04g02889 856 PANTHER AUXIN RESPONSE FACTOR 2 28 839 - -
Cmo04g02889 856 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 839 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02889 Cmo-Chr4:20561953 Cmo10g00015 Cmo-Chr10:102271 0 dispersed
Cmo04g02889 Cmo-Chr4:20561953 Cmo16g00585 Cmo-Chr16:2822610 5.22E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9745 PF02309 AUX_IAA 1.10E-11 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02889 - - bhj:120070853 1475.3