Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02890 ATGGCGGAGCCAGTAGCAGAGCCCAAGGCGTTGCCGGAGCCCGAAAAGAAGAAGGAACAGAGCCTTCCTTTTCTCCAACTCTTCGCTTTTGCTGACAAATACGACTGGTTTCTCATGACCCTTGGCAGTTTAGGCGCCGTTGTCCACGGCTCTTCCATGCCCGTCTTCTTTCTCCTTTTCGGTGAAATGGTCAATGGCTTCGGCAAAAACCAGTTCAATTTTCACAAAATGACATCGGAAGTCACTAAGTATGCTCTGTATTTTGTGTACTTGGGTCTCATTGTCTGTTTCTCATCCTACGCTGAGATCGCATGTTGGATGTACACAGGGGAGAGACAAGTGAGCACATTGCGAAAGAAGTATTTAGAGGATGTTCTGAAACAAGACGTTGGATTCTTCGACACTGATGCAAGAACAGGGGATGTTGTTTTCAGCATCTCAACAGACACCCTTCTTGTTCAAGATGCAATCAGCGAAAAGGTGGGGAACTTCATTCACTACCTCTCGACGTTCTTGGCTGGATTGGTGGTGGGTTTTGTGTCAGCATGGAGGCTAGCACTGTTGAGTATAGCAGTAATTCCAGGCATAGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGACTCACTTCAAAGAGTCGAGAATCATATGCCAATGCTGGCATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCATATGTTGGGGAAAGCAAAGCCCTGAATTCGTATTCAGATTTGATTCAGAATACGCTGAAAATCGGATACAAGGCAGGAATGGCCAAGGGGTTAGGCCTTGGGTGTACCTATGGCATTGCTTGCATGTCTTGGGCTCTTGTGTTCTGGTACGCCGGTGTGTTCATCCGAAACGGCCAGTCCGACGGTGGGAAAGCCTTCACTGCTATATTCTCCGCCATTGTTGGCGGCATGAGTTTGGGGCAGTCGTTTTCAAATTTGGGAGCATTCAGCAAAGGCAAGGTAGCTGGGTACGAATTGATGGAGATAATCAATCAAAGGCCGTCGATCATTCAAGACCCATTAGAGGGAAAGTGCTTGGGTGAAGTTAATGGAAACATTGAGTTTAAAGATGTCTGCTTCAGCTACCCTTCAAGACCGGACGTGATGATCTTCAGGGATTTCTCTATATTCTTTCCGGCGGGGAAGACGGTGGCTGTCGTCGGCGGTAGCGGTTCCGGTAAAAGCACCGTTGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCAAGTTCTTCTGGACAATGTGGATATTAAAACTCTGCAATTGAAATGGCTACGTGATCAGATTGGATTAGTGAACCAAGAACCGGCTCTGTTTGCAACCACCATATATGAAAACATTCTCTACGGCAAACCGGACGCAACGACGGCGGAGGTGGAAGCTGCCACGGTTGCAGCCAATGCTCATAGTTTCATCACAGTCCTGCCCAATGGCTACAACACCCAGGTTGGGGAAAGAGGATTACAGCTCTCCGGTGGGCAAAAACAGAGGATAGCCATAGCCAGAGCAATGTTGAAGAACCCAAAAATCCTTCTCCTGGATGAAGCCACTAGCGCCCTCGATGCAGGCTCTGAAAGCTTAGTTCAAGAAGCTTTAGACCGATTAATGGTGGGAAGAACAACAGTGGTGGTCGCACATCGATTATCAACCATAAGAAATGTCGATTCAATTGCAGTGTTACAACAGGGGCAAGTCGTCGAAACAGGAACTCACGAAGAACTAATCGCAAAACCCGGAGCATATTCCTCATTAATTCGCTTCCAAGAAATGGTTCGAAACAGAGAATTCTCCAACCCATCAACCCGTCGATCACGATCTTCACGGCTAAGTCATTCGTTATCGACAAAATCATTAAGCCTCCGCTCCGGCAGCCTTCGAAATTTGAGCTATTCGTACAGCACAGGCGCCGATGGTAGAATCGAAATGGTCTCAAACGCCGAAAGTGACCGGAAAAATCCAGCCCCTGATGGCTATTTCCTTCGTCTTCTTAAACTCAACGGCCCCGAATGGCCGTATTCAATAATGGGCGCAATTGGGTCTGTTCTATCTGGTTTCATCAGTCCAACATTCGCCATTGTTATGAGTAACATGATCGAAGTCTTCTATTACAAAAATCCCTCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTATATCGGAATCGGAGTTTACGCAGTGGTGGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAAAATCTAACCACCAGAGTCAGAAGAATGATGCTCGCAGCGATCTTGAGGAATGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCAAGTTTAGTAGCAGCAAGATTGGCGACTGATGCAGCTGATGTGAAATCCGCCATTGCTGAAAGAATATCAGTGATTCTTCAAAACATGACTTCACTCTTCACTTCTTTCATTGTTGCATTCATTATCGAATGGAGGGTTTCTCTTCTCATCCTTGCAGCCTTCCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGGTTTGCTGGGGATACTGCAAAGGCCCACGCAAAGACAAGTATGATTGCAGGGGAAGGTGTTAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCACTGTTTCGCCATGAGCTTAATGTTCTTGAGCGGCAGAGCCTTCGTCGGAGCCAAACGGCTGGCGTTCTTTTCGGCATTTCGCAGTTTGCTCTCTATGCATCTGAAGCTCTTGTTCTATGGTACAGTGTTCATTTGGTCAGCAATGGCGGATCAACATTCTCTAAAGTGATTAAAGTCTTTGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCAGAGACTGTTAGTCTTGCTCCTGAGATCGTTCGGGGTGGTGAATCGATCGGTTCTATTTTCTCCATTCTTGATCGCTCGACGAGAATCGAGCCTGATGATCCTGAGGCAGAACCTGTCGAGAGACTTCGTGGGGAAATCGAACTTCGACATGTTGATTTCGCTTACCCGTCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATCTTAGGATCAGGGCTGGTCAGAGCCAGGCGTTGGTTGGAGCTAGTGGATCAGGGAAGAGTTCTGTGATTGCCTTGATTGAGAGGTTTTACGACCCGATCGTCGGGAAAGTTATGATCGACGGGAAGGACATTCGGCGACTGAATTTACAATCGTTGAGGCTGAAAATTGGGTTGGTACAGCAAGAGCCAGCCCTGTTTGCAGCAAGTATTTTTGACAACATTGCATATGGAAAAGATGGAGCAACAGAAGCTGAAGTAATAGAGGCAGCCAGAGCAGCCAATGTGCATGGCTTTGTGAGTGGACTACCTGATGGCTACAAGACACCAGTTGGGGAAAGGGGCGTTCAGCTTTCTGGTGGTCAAAAACAACGCATTGCTATTGCTAGGGCTGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAGGCCACAAGCGCCCTCGACGCCGAGTCAGAGTGCGTGCTACAAGAGGCTCTAGAAAGGCTAATGAGGGGCCGAACCACAGTTGTAGTGGCACATCGCCTATCGACAATCCGGGGTGTCGACAGCATTGGTGTGGTGCAAGATGGGCGCATCGTGGAGCAAGGCAGCCATAGCGAGCTGATAAGTCGAGCCGAGGGGGCTTACTCGAGGCTCTTGCAGCTGCAACACCAACACATATGA 3753 47.54 MAEPVAEPKALPEPEKKKEQSLPFLQLFAFADKYDWFLMTLGSLGAVVHGSSMPVFFLLFGEMVNGFGKNQFNFHKMTSEVTKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEDVLKQDVGFFDTDARTGDVVFSISTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDLIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKVAGYELMEIINQRPSIIQDPLEGKCLGEVNGNIEFKDVCFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAATVAANAHSFITVLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESLVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVLQQGQVVETGTHEELIAKPGAYSSLIRFQEMVRNREFSNPSTRRSRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAESDRKNPAPDGYFLRLLKLNGPEWPYSIMGAIGSVLSGFISPTFAIVMSNMIEVFYYKNPSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIIEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELNVLERQSLRRSQTAGVLFGISQFALYASEALVLWYSVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIVRGGESIGSIFSILDRSTRIEPDDPEAEPVERLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDSIGVVQDGRIVEQGSHSELISRAEGAYSRLLQLQHQHI 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20570027 20575914 - CmoCh04G028900.1 Cmo04g02890 381865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02890 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Cmo04g02890 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Cmo04g02890 1250 Gene3D - 361 620 IPR027417 -
Cmo04g02890 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Cmo04g02890 1250 Gene3D - 998 1250 IPR027417 -
Cmo04g02890 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Cmo04g02890 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo04g02890 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Cmo04g02890 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Cmo04g02890 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Cmo04g02890 1250 SUPERFAMILY ABC transporter transmembrane region 27 326 IPR036640 GO:0005524|GO:0016021
Cmo04g02890 1250 SMART AAA_5 1035 1207 IPR003593 -
Cmo04g02890 1250 SMART AAA_5 390 582 IPR003593 -
Cmo04g02890 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo04g02890 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Cmo04g02890 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524
Cmo04g02890 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Cmo04g02890 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Cmo04g02890 1250 Gene3D ABC transporter type 1, transmembrane domain 86 982 IPR036640 GO:0005524|GO:0016021
Cmo04g02890 1250 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 16 1248 - -
Cmo04g02890 1250 SUPERFAMILY ABC transporter transmembrane region 673 987 IPR036640 GO:0005524|GO:0016021
Cmo04g02890 1250 Pfam ABC transporter transmembrane region 41 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo04g02890 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo04g02890 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 16 1248 IPR039421 -
Cmo04g02890 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02890 Cmo-Chr4:20570027 Cmo06g00387 Cmo-Chr6:1880723 0 dispersed
Cmo17g00649 Cmo-Chr17:6728631 Cmo04g02890 Cmo-Chr4:20570027 2.11E-92 dispersed
Cmo18g00009 Cmo-Chr18:31575 Cmo04g02890 Cmo-Chr4:20570027 1.46E-99 dispersed
Cmo09g00092 Cmo-Chr9:438438 Cmo04g02890 Cmo-Chr4:20570027 0 transposed
Cmo19g00237 Cmo-Chr19:1666009 Cmo04g02890 Cmo-Chr4:20570027 0 transposed
Cmo20g00974 Cmo-Chr20:5407954 Cmo04g02890 Cmo-Chr4:20570027 5.12E-88 transposed
Cmo15g00292 Cmo-Chr15:1372725 Cmo04g02890 Cmo-Chr4:20570027 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02890 K05658 - csv:101212585 2227.21