Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02892 ATGAAGTTTTCTGGAAATTTTAATGACGTTCTGGTTCTTCTTTTGAAACCCCTTTTGATCTTGTTCTGTGCTCTGTTCCCGCTCCTACTCTGTTTCTTCAAATACTATAATAAACAACCCCTGTTTCAACAACATGTTGATTGTGATGGAATTGAAGAAACGCCATTTTCATCTCTAAGCTTTAAGTTTCCAACGTACGAGGATTTTCTGAGAACTACTACACAGAATGTTGACCCACCTGTATATGAAACTTCAAATGAGAACGATTTTGATGATTCGAGTTCTTCAACTTCTGACACGGATTTAGATCTTTGTCCCCGAGAAGACCCAGAAATTTTTCTCCCAAATGGGTTGCGAGGCAGCAATGATGTCATAATCCAAGATGATAATGAATTTGATGAACCTGTGGAAGCCATATCGGGGAGTTTTGATCAGGACTTCATAGAAGAACTGAAAAATGAGATTAAGAAGGTGAAAGCCAAAGCAAAATCCGAATCTGGGTTGCCCTCAATTCCTGAAGAATCGGAGTACCCAATAGCCATGGAAGAAGATTCAAAACGACGGAAGAAAGAAGAAAGATCAAATCGCAAAGGCATAAGAAAAGAACTCCACGAATTCCACAAGCAATACACAGAAAAGATGCGAAAATACGACACTTTAAATCACCAAATCGCAAAAGAGTGGAAAATGAAGCAATCGAAGGGGTTAGTGGAGTCTGTTTCATCGAAAGGGCTGTGTGGGTGCAGGCCTGATAAGAAAGGCGAAGCAAAAACAGGGGAAAACAGAGGAATGGAAGGGGAGTTGGAGGTGGTTTATGTGGTGCAAATGTGGGTTTCATGGGAGTTTATAGTGTGGCAGTACAAGAAAGCTTTGGAGATTAGCGGCGGAGAAGGGTATGGAAGTTACAGATTCAATGAAGTTGCAGAGAAATTTGAGCATTTTAAAGTGTTGATACAGAGATTTATGGAGAATGAATGGTCGGAGGAAGGGTCGAGAGTTGAATATTATGCTACAAGTCGTGTTGGTAAGAGAAAGCTTCTGCAAGTTCCTCTGCTCAAAGAAGACGAAGCGAAAGACAATAAGAAGACAGGAAGAAGAGAGGAGGAAGAGGGCGTTAAAATGGATAGGGTTATTGAGATATTGCAGGAATGTATAAGAGTGTTCTGGCAATTCATTCGAGCCGATAAACTTGCCCATATATCATCAACTTCAAAGTCTCATATTATAGAACAACAACAAGAGCGTAGCAGCCCTGCATATTCCAACATTCTAAACCAAATTCTGTTAGATCTTCATAAAAAGGACAGAAAATTGAAGAAGATAATACAGAGAAAGACATGGAGATTGAAGAACTGTAAAGATGCCTTTGATGAAGATGACCCAGATGATGAAGCTTACTTCTTGGCTATGGTGGATTTGAAGTTGAGTTCGTCTTCAGAAATGCAAGTTCTGGCATGCAATACTCCCCATTTCTTGGGAAGGCGGGAATTATGCTTTGATGGCGTGTCTTCTGTTTCTCAACCCTCCACTTCAAATCCCACCACTGCTCAATCCATTTCCATTCAAAGGAGTGCGGGCGATGAGTCTGGGGATCTGGGTTCTGTACTTAGCAGCAAATTTCTTTTCACAACTCGGCGGACGTTATTTGCTAGTTTGTTCCTAAGTTCTTGGGCATATCCTTCAAGTGTATTTACAGCTCAAGCTTTGGGAGATCCATCTGTAACCATTGAGGAAGTAACTCCCACTATTTTCCCTTCTGGAACCCTCTTCCCTACAGAGGAAAGAATTGTCCAACTGTTCGAGAAAAATACGTACTCTGTCGTCAATATTTTCGATGTAACTTTGCGACCTCAACTTAACGTAACTGGCATGGTTGAGATTCCTGAAGGAAATGGTTCGGGAGTAGTCTGGGATGATCAAGGACATATAGTAACAAATTATCATGTAATTGCTAGTGCTCTTGCAAGAAATCCGAGTCCTGGGCAGGTTGTTGCACGTGTTAATATTCTCGCATCCGATGGGATACAGAAGAATTTTGAAGGCAAGCTCATTGGTGCAGACCGTACAAAGGATCTTGCTGTTTTGAAGGTGGATGCCTCAAATGAGTTGTTGAGGCCAATCAAGGTGGGGCAGTCATCTTCTCTTAAAGTGGGGCAACAATGCTTGGCAATTGGAAATCCTTTTGGTTTTGATCATACCCTCACCGTTGGAGTCATTAGTGGACTGAACCGTGACATTTTTAGTCAGACTGGTGTCACCATTGGGGGCGGAATCCAAACGGATGCAGCTATTAATCCTGGGAATAGTGGAGGTCCTCTACTTGACTCGAAAGGGAACTTAATTGGTATTAATACTGCTATTTTTACTCAAACAGGAACATCAGCTGGGGTTGGTTTTGCAATCCCATCTTTAACCGTAGTCAAGATTGTTCCTCAGTTAATCCAATTTGGCAGAGTAATTCGGGCTGGCATAAATGTAGATTTTGCTCCCGACCTGATCGCTAATCAACTCAACGTTCGTGATGGAGCTCTAATTCTACTGGTTCCTGCAAATAGTCCTGCAGCCAAAGCCGGACTATTACCCACCACCAGAGGTTTTGCAGGCAATATAGTACTCGGAGACATCGTCACCGCCATTGATAACAAGCCGGTAAGAAACAAAGCAGAATTGTACAAGTTATTGGATGAGTACAACGCCGGAGACAAAGTTATTTTAAAGATAGAGAGAGGAGGACAAAGTCTGGAGCTGCCTCTGATATTAGAAGAAAGTCAATAG 2775 41.91 MKFSGNFNDVLVLLLKPLLILFCALFPLLLCFFKYYNKQPLFQQHVDCDGIEETPFSSLSFKFPTYEDFLRTTTQNVDPPVYETSNENDFDDSSSSTSDTDLDLCPREDPEIFLPNGLRGSNDVIIQDDNEFDEPVEAISGSFDQDFIEELKNEIKKVKAKAKSESGLPSIPEESEYPIAMEEDSKRRKKEERSNRKGIRKELHEFHKQYTEKMRKYDTLNHQIAKEWKMKQSKGLVESVSSKGLCGCRPDKKGEAKTGENRGMEGELEVVYVVQMWVSWEFIVWQYKKALEISGGEGYGSYRFNEVAEKFEHFKVLIQRFMENEWSEEGSRVEYYATSRVGKRKLLQVPLLKEDEAKDNKKTGRREEEEGVKMDRVIEILQECIRVFWQFIRADKLAHISSTSKSHIIEQQQERSSPAYSNILNQILLDLHKKDRKLKKIIQRKTWRLKNCKDAFDEDDPDDEAYFLAMVDLKLSSSSEMQVLACNTPHFLGRRELCFDGVSSVSQPSTSNPTTAQSISIQRSAGDESGDLGSVLSSKFLFTTRRTLFASLFLSSWAYPSSVFTAQALGDPSVTIEEVTPTIFPSGTLFPTEERIVQLFEKNTYSVVNIFDVTLRPQLNVTGMVEIPEGNGSGVVWDDQGHIVTNYHVIASALARNPSPGQVVARVNILASDGIQKNFEGKLIGADRTKDLAVLKVDASNELLRPIKVGQSSSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIFTQTGTSAGVGFAIPSLTVVKIVPQLIQFGRVIRAGINVDFAPDLIANQLNVRDGALILLVPANSPAAKAGLLPTTRGFAGNIVLGDIVTAIDNKPVRNKAELYKLLDEYNAGDKVILKIERGGQSLELPLILEESQ 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20587467 20595377 - CmoCh04G028920.1 Cmo04g02892 381867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02892 924 PANTHER PEPTIDASE S12 525 923 - -
Cmo04g02892 924 MobiDBLite consensus disorder prediction 76 102 - -
Cmo04g02892 924 SUPERFAMILY PDZ domain-like 778 912 IPR036034 GO:0005515
Cmo04g02892 924 Pfam PDZ domain 839 917 IPR001478 GO:0005515
Cmo04g02892 924 SUPERFAMILY Trypsin-like serine proteases 596 819 IPR009003 -
Cmo04g02892 924 MobiDBLite consensus disorder prediction 506 527 - -
Cmo04g02892 924 MobiDBLite consensus disorder prediction 161 200 - -
Cmo04g02892 924 Pfam Protein of unknown function (DUF1666) 267 476 IPR012870 -
Cmo04g02892 924 CDD PDZ_serine_protease 823 918 - -
Cmo04g02892 924 Gene3D - 823 924 IPR036034 GO:0005515
Cmo04g02892 924 PRINTS HtrA/DegQ protease family signature 754 771 IPR001940 GO:0004252|GO:0006508
Cmo04g02892 924 PRINTS HtrA/DegQ protease family signature 717 741 IPR001940 GO:0004252|GO:0006508
Cmo04g02892 924 PRINTS HtrA/DegQ protease family signature 641 653 IPR001940 GO:0004252|GO:0006508
Cmo04g02892 924 PRINTS HtrA/DegQ protease family signature 776 793 IPR001940 GO:0004252|GO:0006508
Cmo04g02892 924 PRINTS HtrA/DegQ protease family signature 869 881 IPR001940 GO:0004252|GO:0006508
Cmo04g02892 924 MobiDBLite consensus disorder prediction 179 200 - -
Cmo04g02892 924 Coils Coil 148 168 - -
Cmo04g02892 924 PANTHER PROTEASE DO-LIKE 8, CHLOROPLASTIC 525 923 - -
Cmo04g02892 924 Pfam Trypsin-like peptidase domain 632 783 - -
Cmo04g02892 924 SMART pdz_new 814 911 IPR001478 GO:0005515
Cmo04g02892 924 Gene3D - 587 707 IPR043504 -
Cmo04g02892 924 MobiDBLite consensus disorder prediction 76 101 - -
Cmo04g02892 924 MobiDBLite consensus disorder prediction 506 529 - -
Cmo04g02892 924 Gene3D - 708 821 IPR043504 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02892 - - - cmax:111487563 795.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02892 Cmo18g01175 CCT
Cmo04g02892 Cmo15g00289 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02839 Cmo-Chr4:20292569 Cmo04g02892 Cmo-Chr4:20587467 1.59E-98 dispersed
Cmo04g02892 Cmo-Chr4:20587467 Cmo15g00348 Cmo-Chr15:1622528 1.21E-100 dispersed
Cmo11g01049 Cmo-Chr11:5852074 Cmo04g02892 Cmo-Chr4:20587467 9.46E-55 wgd
Cmo14g00603 Cmo-Chr14:3053443 Cmo04g02892 Cmo-Chr4:20587467 6.02E-51 wgd
Cmo15g00289 Cmo-Chr15:1358981 Cmo04g02892 Cmo-Chr4:20587467 0 wgd
Cmo18g01175 Cmo-Chr18:11846219 Cmo04g02892 Cmo-Chr4:20587467 1.96E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g912 . Blo16g01116 Bda01g02158 Bda11g01216 Bpe13g01411 . . . . Cmo18g01175 . Cma18g01153 . Car18g01062 Sed08g1991 Cpe09g00177 . Bhi07g01570 Tan04g1083 Cmetu04g0016 Lac13g0316 Hepe10g1739 . . Cla05g02444 Cam05g2629 Cec05g2663 Cco05g2701 Clacu05g2633 Cmu05g2487 Cre05g2600 Cone13ag0956 . . . Lsi04g00428 Csa05g02447 Chy10g00998 Cme10g00418 . . . Bda11g01216 . . Bma01g00097 Bma06g00685 . Cmo04g02892 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi14g1527 . Blo11g00588 . . . . Bma14g01493 . . . . . . . Sed03g0204 . Cpe13g00946 Bhi06g00406 Tan11g0520 Cmetu09g1553 . . . Lcy10g2002 . . . . . . . . . Cone2ag0548 . Lsi02g01490 Csa05g02979 . . . . Bda07g01357 . . . . . . Cmo04g02892 Cmo15g00289 . Cma15g00275 Car04g02660 Car15g00272 . Cpe01g02390 . . . . . . . Cla09g01787 Cam09g1877 Cec09g1940 Cco09g2033 . . Cre01g0630 . . Chy09g00258 Cme09g00282
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006431 1 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02892 Cmo_Chr04 FPKM 1.828834 2.631788 0.50396 0.439823 0.110793 0.0 0.0 5.36621 5.412661 5.040475