Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02894 ATGAGGAAGCGTCAAGTTGTAGTTAGAAGGGAAGAAAGCTCAAGAGACACTGTGGCTTCATCTTTGACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGCGTCGGAGGGTATGCTGTCGACGGGTGTCGGGAATTCATGGCGAGTGGCGACGAAGGGACGATCGCTGCACTCACTTGTGCTGCCTGTGGTTGTCACCGGAACTTCCATAGAAGACAAGCTGTAGGAACTGAGGTTGTGTGTGATTGTTCTTCATCTCCCTCAAATGGAGCTTGA 291 50.86 MRKRQVVVRREESSRDTVASSLTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTIAALTCAACGCHRNFHRRQAVGTEVVCDCSSSPSNGA 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20602294 20602584 - CmoCh04G028940.1 Cmo04g02894 381869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02894 96 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 28 78 IPR006456 -
Cmo04g02894 96 PANTHER BNAA09G02420D PROTEIN 2 95 - -
Cmo04g02894 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 95 - -
Cmo04g02894 96 Pfam ZF-HD protein dimerisation region 27 79 IPR006456 -
Cmo04g02894 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02894 - - - cmax:111486901 183.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02894 Cmo-Chr4:20602294 Cmo10g00205 Cmo-Chr10:922114 2.48E-28 dispersed
Cmo01g00824 Cmo-Chr1:4412734 Cmo04g02894 Cmo-Chr4:20602294 5.22E-37 wgd
Cmo11g00162 Cmo-Chr11:812267 Cmo04g02894 Cmo-Chr4:20602294 1.03E-26 wgd
Cmo15g00287 Cmo-Chr15:1354802 Cmo04g02894 Cmo-Chr4:20602294 1.64E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g914 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02894 . . . . Car15g00270 Cpe13g00948 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9747 PF04770 ZF-HD_dimer 3.40E-30 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02894 Cmo_Chr04 FPKM 4.087623 3.378835 16.415276 16.040539 22.196692 23.842142 21.685759 0.0 0.0 0.0