Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02895 ATGGATTTAGCCCCAGCAGCTCCCATCCCTACTACTAATAACACTAAATCCCCCGACCCCGACACTGATAATGCTCCCACAACCATTCCGCCGCCTTCCGCTAAATCGCCGCCCTTCACCAACGGCCTTCTCAAGCGCCACCACGCTCAACAACACCCTCCGCTTGTTACTTACAAAGAATGTCTCAAAAACCACGCCGCCACTTTAGGAGCTCATGCCTTAGACGGATGTGGGGAATTTATGCCCTCTCCTTCTGCCACTCCTAACGATCCCACTTCGCTTAAGTGCGCTGCGTGTGGCTGTCACCGGAATTTCCACCGCCGGGACCCTGAGGAACCAATCTCCACTTTGGCGATTAATTCCGCTCCGACTCATGTCATTGAGTATCAGCCGCACCATCGCCATCACCCGCCTCCTCCGCCGTTGGCTGGCAATTGGAGTCCGAATTCTGCATCGCCGCCGCCGATCTCGTCGTCGTATTACCCTTCCGCGCCACATATGTTATTGGCGCTTTCAGCTGGGTTGTCCGGTCCTCCGCCGGAAAACGCACAGCGGAGCCCAAATGGACGGAAACGATTCAGAACAAAATTCAGCAACGAACAAAAGGAGAAAATGTTGGATTTAGCGGAACGAGTTGGATGGAAAATGCAGAAGAGAGACGAAGATTTGGTTCGAGATTTCTGCAATGAAATCGGAATTGAAAGAGGGGTTCTCAAAGTATGGATGCACAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACTACCACCACCCCCACCGCCACCGCCACCGCCGCCGCCGCCGTCAACAACAACGAAGACAGAGCAGATGCGGGTTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCCTCTTGA 894 53.02 MDLAPAAPIPTTNNTKSPDPDTDNAPTTIPPPSAKSPPFTNGLLKRHHAQQHPPLVTYKECLKNHAATLGAHALDGCGEFMPSPSATPNDPTSLKCAACGCHRNFHRRDPEEPISTLAINSAPTHVIEYQPHHRHHPPPPPLAGNWSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAQRSPNGRKRFRTKFSNEQKEKMLDLAERVGWKMQKRDEDLVRDFCNEIGIERGVLKVWMHNNKNTMGKKTDTNGATTTTPTATATAAAAVNNNEDRADAGLHMHIGSNGSSSSS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20605577 20606470 - CmoCh04G028950.1 Cmo04g02895 381870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02895 297 MobiDBLite consensus disorder prediction 8 23 - -
Cmo04g02895 297 SUPERFAMILY Homeodomain-like 176 251 IPR009057 -
Cmo04g02895 297 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 109 IPR006456 -
Cmo04g02895 297 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 11 267 - -
Cmo04g02895 297 MobiDBLite consensus disorder prediction 130 151 - -
Cmo04g02895 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 267 - -
Cmo04g02895 297 MobiDBLite consensus disorder prediction 172 192 - -
Cmo04g02895 297 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cmo04g02895 297 Gene3D - 178 251 - -
Cmo04g02895 297 MobiDBLite consensus disorder prediction 1 49 - -
Cmo04g02895 297 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Cmo04g02895 297 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 190 247 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02895 Cmo-Chr4:20605577 Cmo03g00772 Cmo-Chr3:6406729 6.35E-51 dispersed
Cmo11g01047 Cmo-Chr11:5821076 Cmo04g02895 Cmo-Chr4:20605577 1.63E-80 wgd
Cmo14g00601 Cmo-Chr14:3042234 Cmo04g02895 Cmo-Chr4:20605577 3.47E-91 wgd
Cmo15g00285 Cmo-Chr15:1345770 Cmo04g02895 Cmo-Chr4:20605577 5.35E-117 wgd
Cmo18g01173 Cmo-Chr18:11839574 Cmo04g02895 Cmo-Chr4:20605577 7.13E-54 wgd
Cmo04g01734 Cmo-Chr4:8784011 Cmo04g02895 Cmo-Chr4:20605577 5.51E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9748 PF04770 ZF-HD_dimer 2.30E-28 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02895 - - csv:101213548 427.172