Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02901 ATGGCTGGTCAGAGGAACAGTTATGGAAAACGGAACCATTCTCAGTCTGATTATGCTGAAAATGGAGGGAACAGGCGAAGAAGTCATGGTGATGACCGAGACCAGTTTGTCATAGATCCAGAGGATACTGTTTACCGGTATTTGTGCCCTGTAAAAAAGATTGGTAGTGTTATTGGAAGAGGAGGGGAGATAGTGAAGCAGTTAAGGATAGATACTAAATCAAAGATTAGAATTGGAGAAACAGTGCCTGGATGTGATGAGCGTGTTATAACTATCTACAGTCCAAGCAATGAGATTAATTCCATGGAAGATAGTGATTATGTTTCTCCTGCTCAGGAGGCTTTGTTTAAAGTGCATGATAGAGTTGTGGCTGATGACTTAAATGAGGAGGAATCTGAGGGAGGAGGTCACCATGTCACAGCGAGAATTCTTGTACCATCTGATCAAATTGGTTGTATTATTGGGAAAGGTGGGCAGATTGTGCAGAATATTCGCACTGAGACTGGGGCACTGGTTCGAATTCTTAAGGATGATCATTTGCCACGTTGTGCTCTGAATTCTGATGAACTTGTACAGGTTTCTGGTGAACCCTCGATTGTGAAGAAAGCCTTGTACCAGATTGCATCTCGACTGCATGACAATCCATCACGATCTCAGCATCTACTTGCTTCTGCCATACCTGGTGTCTATGCTTCTGGTGGTTCAATTTTGGCTCCCACACATGGTGCTCCAATAATGGGATTAGCCCCATTGGTTGGTCCGTATGGAGGTTATAAAGGTGATAGTGGTAATTGGTCCAGGTCTTTATATTCAGCTCCAAGAGAAGAATTGTCTTCAGCAAAAGAGTTTTCTCTCCGACTGGTATGTCCAAGTGAAAATATTGGAGGTGTCATTGGAAAAGGTGGAGCCGTAATCAATCAAATTAGACAGGAGACTAAGGCTGCCATAAAAGTTGATAGTTCTACTGAAGGAGATGATAGCTTGATTAATATTTCATCTAAGGAGTTCTTTGAAGACTCATATTCTCCCACATTGGAAGCTGCATTGCGCTTGCAACCAAGATGCAGTGAGAAAGTAGAAAGAGATTCTGGGATTATTTCATTCACAACCCGCCTGCTTGTGCCTACATCACGAATTGGTTGCCTAATTGGTAAAGGTGGAGCTATCATTACTGAGTTGAGAAGGCTCACCAAAGCTAATATTCGAATACTGTCAAAAGAGAACCTTCCTAAGGTTGCCTTGGAGGATGATGAAATGGTGCAGATATCTGGGGATCTTGATGTCGCCAAGGAGGCTCTTGTACATATAGTGACTAGGCTAAGAGCCAACCTTTTTGATAGAGAAGGTGCTCTCTCTGCTATGCTGCCTGTTCTGCCTTATCTTCCCCTATCAGCTGATGGTTCAGATAGTCTAAATTATGATGGGAGAGATAGTAAAAGACATGGGCGTGGACATTCTTATTCTAGTGGTTATGGGGGTTTCACTGATTTGGCTGCTGGTGATGGTTATGGAAGTTACAGTGGTTCACAGATTGGTGGTGGTGGTGGTGGTGGTAATGCATACGGGGCCTATGGAAATTTTTCTATGGGACGAAGTGGTAGCTCAGGGTAA 1611 43.27 MAGQRNSYGKRNHSQSDYAENGGNRRRSHGDDRDQFVIDPEDTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIGETVPGCDERVITIYSPSNEINSMEDSDYVSPAQEALFKVHDRVVADDLNEEESEGGGHHVTARILVPSDQIGCIIGKGGQIVQNIRTETGALVRILKDDHLPRCALNSDELVQVSGEPSIVKKALYQIASRLHDNPSRSQHLLASAIPGVYASGGSILAPTHGAPIMGLAPLVGPYGGYKGDSGNWSRSLYSAPREELSSAKEFSLRLVCPSENIGGVIGKGGAVINQIRQETKAAIKVDSSTEGDDSLINISSKEFFEDSYSPTLEAALRLQPRCSEKVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTKANIRILSKENLPKVALEDDEMVQISGDLDVAKEALVHIVTRLRANLFDREGALSAMLPVLPYLPLSADGSDSLNYDGRDSKRHGRGHSYSSGYGGFTDLAAGDGYGSYSGSQIGGGGGGGNAYGAYGNFSMGRSGSSG 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20627309 20630221 + CmoCh04G029010.1 Cmo04g02901 381876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02901 536 MobiDBLite consensus disorder prediction 20 36 - -
Cmo04g02901 536 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 367 441 IPR036612 GO:0003723
Cmo04g02901 536 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 270 332 IPR036612 GO:0003723
Cmo04g02901 536 Gene3D - 41 219 - -
Cmo04g02901 536 Gene3D - 282 443 - -
Cmo04g02901 536 SMART kh_6 281 353 IPR004087 GO:0003676
Cmo04g02901 536 SMART kh_6 41 123 IPR004087 GO:0003676
Cmo04g02901 536 SMART kh_6 366 441 IPR004087 GO:0003676
Cmo04g02901 536 SMART kh_6 137 212 IPR004087 GO:0003676
Cmo04g02901 536 CDD PCBP_like_KH 284 334 - -
Cmo04g02901 536 Pfam KH domain 369 436 IPR004088 GO:0003723
Cmo04g02901 536 Pfam KH domain 140 208 IPR004088 GO:0003723
Cmo04g02901 536 Pfam KH domain 285 333 IPR004088 GO:0003723
Cmo04g02901 536 Pfam KH domain 45 97 IPR004088 GO:0003723
Cmo04g02901 536 MobiDBLite consensus disorder prediction 1 19 - -
Cmo04g02901 536 CDD PCBP_like_KH 369 437 - -
Cmo04g02901 536 ProSiteProfiles Type-1 KH domain profile. 42 115 - -
Cmo04g02901 536 MobiDBLite consensus disorder prediction 1 36 - -
Cmo04g02901 536 ProSiteProfiles Type-1 KH domain profile. 138 207 - -
Cmo04g02901 536 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 496 - -
Cmo04g02901 536 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 38 98 IPR036612 GO:0003723
Cmo04g02901 536 PANTHER PROTEIN BTR1-LIKE 9 496 - -
Cmo04g02901 536 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 135 215 IPR036612 GO:0003723
Cmo04g02901 536 ProSiteProfiles Type-1 KH domain profile. 367 436 - -
Cmo04g02901 536 ProSiteProfiles Type-1 KH domain profile. 282 352 - -
Cmo04g02901 536 CDD PCBP_like_KH 44 119 - -
Cmo04g02901 536 CDD PCBP_like_KH 140 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02901 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101220588 905.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02901 Cmo15g00272 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02901 Cmo-Chr4:20627309 Cmo09g00601 Cmo-Chr9:2991375 2.00E-34 dispersed
Cmo08g00140 Cmo-Chr8:780201 Cmo04g02901 Cmo-Chr4:20627309 9.53E-19 dispersed
Cmo17g00487 Cmo-Chr17:3779992 Cmo04g02901 Cmo-Chr4:20627309 2.60E-18 dispersed
Cmo15g00272 Cmo-Chr15:1306351 Cmo04g02901 Cmo-Chr4:20627309 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g929 . . . . . . . Bma15g00293 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0574 Cone9ag0580 . . . . . . . . . . . . . Cmo04g02901 . . . . Car15g00261 Cpe13g00957 . . . . . . . . . . . . . . . . . . .
Vvi14g1566 . Blo11g00579 Bda01g01230 Bda13g01696 Bpe02g01449 Bpe14g00170 Bma14g01457 . . . . . . . Sed11g2011 . Cpe13g00957 Bhi06g00384 Tan11g0501 Cmetu09g1584 . . . Lcy10g2015 . . . . . . . . . Cone2ag0199 Cone16ag0842 Lsi02g01474 Csa05g02996 . . . Blo18g00394 Bda07g01349 . . Bpe11g01454 Bma01g01048 Bma02g00389 . Cmo04g02901 Cmo15g00272 Cma04g02771 Cma15g00263 Car04g02668 Car15g00261 . Cpe01g02399 . . . . . . . Cla09g01771 Cam09g1861 Cec09g1923 Cco09g2017 . . Cre01g0647 . . Chy09g00237 Cme09g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003362 3 1 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02901 Cmo_Chr04 FPKM 1.730392 0.838293 0.51501 0.119344 4.515239 1.076845 2.541538 0.667519 0.206965 0.556037