Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02908 ATGAAGTTTGGGAAGGAGTTTTTGTCCCAAATGGTGCCTGAATGGCAAGAAGCGTATTTGGATTACAATAATCTGAAAGCCGTTCTGGCAGAAGTGAGCCTATCTAAGCAGCCAAAAGCTTCAGATGCCTCAGGCAAGCTAAAGAGAAAGGTGTCTTTGTACAGAGCTTTCAGTGGGCTTACAGGGCGGAGGCATTCTCCAAGGATGCAGGATGATGCGATAATTACCAACATAGTTCAGAATGGTTCTGAAGAGAGCTACCAGAGCATGTTCTTCATGTCATCAGATCAAGGGGGTGAAAATGAGGTGGTTTTCTTTAGGAGACTTGATTATGAATTCAATAAAGTGGTGAGGTTTTACAAGAAGAAGGTGGGGGAGTTGATAGTGGAGGCAGAGGAATTGAGCAAACAGATGGATATCTTGATTGCTCTGAAGATAAAGGTGGAGAATCCAGATGTTGCGTTCGAAGATGTCAATGAACATGTCGATCTAGCAGGAAGTGTAGCCACCTCAACTTGTAATTCCATCAATGGCAGAGTTTCAGATTGTATTTTTGAAGGACGATCACACTTGGAAATAACTCAGGAAGTTGAGGGGGAAGATGACGCAGCTTCGGTAGACGAGGACATGGAAGCAAAAGAGGCAAAGGGTCACTGCAGGAAGGGGAGTAGAGGAAGCATTCAAGCCACTCAAGAACTCAGGCCCGCTCCATTAGACTTCTTACCCCATGTACGGATTAACATCTCCCCGGAAACACCAGCATCAACTATAAAATACATGGTTGCACGTTCCAAGGCTCGGTTATCGTATAATAAGACCGAGTTGAGGAAGTCAGAAGAATTGATGACTCGGGCCTTGATTCAATTCTACCAAAAGCTTCAAGTTCTAAAAGGCTACAGCTTCTTAAATACATTGGCCATTTCGAAGATCTTGAAGAAGTATGAAAAGATAACATCACGTAAAGTGTCAAAGGTCTACTTAGATATGGTGGATAAATCTCCTCTTGGTTGCACTATTGAGCTTACAAGGCTCATAGAAAGAGTGGAGGCTGCTTTCATTAAGCACTTCGCAAATGGAAACCGAAGAAGAGGGATGGACATTTTGAGAAGAAAAATCAGAAGGGAAAGACATGGAATTACATTTTTCTCCGGTTTCTTCTTCGGCTGTGCTCTTGCACTTATAGTGGCCATCGTTTTAGTTATACACCTAAGAGATATATTTGAGAGCGAAGGGCGCAACCAGTATATGAATAACATATTTCCTCTCTACAGCTTTTTTGGATTCATCATCTTGCACCTGATGATATACTCTGCAAATATATACTTTTGGAGGCGTTACCGTGTCAATTACACATTTATGTTTGGCTTGAAGCAAGGAACAGAGTTGGGTCATCGAGAGGTCTTTTTTCTTAGTTCAGGTCTTGCGGTGCTCACATTGGCATGTGTTCTCTCACATTTGGATATGGAGATTGACCCAGAAACCAAAAGCTACGAAGCCCTAACCGAGTCGATTCCTTTAGCTCTACTCACTGCTGTTCTTCTTATAATATTTTGTCCTTTCAACATCATATTCCGTTCTAGCCGCTTCTTCCTCATTCGTAGTGCATTTCGTTTGGTCTGCGCTCCGTTCTACAAGGTTACAATGGAAGACTTTTTCTTGGCAGATCAACTTACCAGCCAGGTGCAAGCCTTCAGAAGTTTAGAATTCTATATCTGCTACTATGGGTGGGGTGACTTTATACGACGAACGAATTCGTGCTCTCAGAGCAAAATTTTTGAAGCTTTTTACTTCGTTGTTGCAACTATTCCATACTGGATTCGTACTCTTCAGTGCATTCGGCGCTTGATCGAAGATAAAGACGTAAAGCATGTGTTTAATGGACTGAAGTACTTCTCAACAATTGTTGCAATTGCAATGAGAACAAGCAATGATTTGAATATGGGGTTGACATGGAGAACCTTGGCTCTTGTTAGTTCTGTTGTTGCAACAATATCAGGCACATATTGGGATATAGTATGTGACTGGGGCCTCTTACGACGCAACTCGAAAAATCCATGGTTGAGAGACAAATTACTAATATCCAACAAGAGTGTTTACTTTGCAGCAATTGTACTGAATGTCTTGCTACGGCTTGCTTGGATGCAATCAGTATTAGGTTTTAGAGAAGCTCCATTCATCCATAGACAAGCGTTGATTGCCATTGTCGCCGTGTTGGAAATCATTCGACGAGGAATCTGGAATTTCTTCAGGTTGGAGAATGAGCACCTAAACAATGTGGGGAAATACAGGGCATTCAACTCTGTTCCACTTCCTTTCAACTACGACAATGAGGAGATGAGGACCGGCTAA 2349 42.27 MKFGKEFLSQMVPEWQEAYLDYNNLKAVLAEVSLSKQPKASDASGKLKRKVSLYRAFSGLTGRRHSPRMQDDAIITNIVQNGSEESYQSMFFMSSDQGGENEVVFFRRLDYEFNKVVRFYKKKVGELIVEAEELSKQMDILIALKIKVENPDVAFEDVNEHVDLAGSVATSTCNSINGRVSDCIFEGRSHLEITQEVEGEDDAASVDEDMEAKEAKGHCRKGSRGSIQATQELRPAPLDFLPHVRINISPETPASTIKYMVARSKARLSYNKTELRKSEELMTRALIQFYQKLQVLKGYSFLNTLAISKILKKYEKITSRKVSKVYLDMVDKSPLGCTIELTRLIERVEAAFIKHFANGNRRRGMDILRRKIRRERHGITFFSGFFFGCALALIVAIVLVIHLRDIFESEGRNQYMNNIFPLYSFFGFIILHLMIYSANIYFWRRYRVNYTFMFGLKQGTELGHREVFFLSSGLAVLTLACVLSHLDMEIDPETKSYEALTESIPLALLTAVLLIIFCPFNIIFRSSRFFLIRSAFRLVCAPFYKVTMEDFFLADQLTSQVQAFRSLEFYICYYGWGDFIRRTNSCSQSKIFEAFYFVVATIPYWIRTLQCIRRLIEDKDVKHVFNGLKYFSTIVAIAMRTSNDLNMGLTWRTLALVSSVVATISGTYWDIVCDWGLLRRNSKNPWLRDKLLISNKSVYFAAIVLNVLLRLAWMQSVLGFREAPFIHRQALIAIVAVLEIIRRGIWNFFRLENEHLNNVGKYRAFNSVPLPFNYDNEEMRTG 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20658145 20663200 - CmoCh04G029080.1 Cmo04g02908 381883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02908 782 ProSiteProfiles EXS domain profile. 587 782 IPR004342 GO:0016021
Cmo04g02908 782 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 77 777 - -
Cmo04g02908 782 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 66 - -
Cmo04g02908 782 ProSiteProfiles SPX domain profile. 1 328 IPR004331 -
Cmo04g02908 782 CDD SPX_PHO1_like 2 324 IPR034092 -
Cmo04g02908 782 Pfam SPX domain 1 330 IPR004331 -
Cmo04g02908 782 Pfam EXS family 420 756 IPR004342 GO:0016021
Cmo04g02908 782 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 9 77 777 - -
Cmo04g02908 782 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 9 1 66 - -
Cmo04g02908 782 Coils Coil 117 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02908 - - - csv:101212473 1327.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02908 Cmo18g01153 CCT
Cmo04g02908 Cmo18g01153 ECH
Cmo04g02908 Cmo15g00265 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00165 Cmo-Chr3:2393185 Cmo04g02908 Cmo-Chr4:20658145 7.76E-30 dispersed
Cmo04g02908 Cmo-Chr4:20658145 Cmo15g00267 Cmo-Chr15:1283790 0 dispersed
Cmo18g01077 Cmo-Chr18:11346562 Cmo04g02908 Cmo-Chr4:20658145 1.38E-135 dispersed
Cmo15g00265 Cmo-Chr15:1278294 Cmo04g02908 Cmo-Chr4:20658145 0 wgd
Cmo18g01150 Cmo-Chr18:11756744 Cmo04g02908 Cmo-Chr4:20658145 0 wgd
Cmo04g01756 Cmo-Chr4:8859495 Cmo04g02908 Cmo-Chr4:20658145 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g962 . . . . . . . . . Cmo18g01153 . Cma18g01131 . Car18g01044 Sed07g1954 Cpe09g00196 . Bhi07g01532 Tan04g1053 Cmetu10g1096 Lac13g0340 Hepe10g1766 . . Cla05g02421 Cam05g2603 Cec05g2635 Cco05g2674 Clacu05g2604 Cmu05g2457 Cre05g2573 . . . . Lsi04g00395 . Chy10g01027 Cme10g00391 . . Bda07g01518 . . . . . . Cmo04g02908 . . . . Car15g00257 Cpe13g00962 . . . . . . . . . . . . . . . . . Chy09g00229 .
Vvi14g1575 Blo10g00142 Blo11g00573 . . . . . . . . . . . . . . Cpe13g00962 Bhi06g00375 Tan11g0488 . . . . . . . . . . . . . . . . Lsi02g01467 Csa05g02482 . . . . . Bda12g00171 . . . . . Cmo04g02908 Cmo15g00265 Cma04g02778 Cma15g00253 Car04g02676 Car15g00256 . Cpe01g02407 . . . . . . . Cla09g01763 Cam09g1854 . Cco09g2009 . . Cre01g0655 . . Chy09g00228 Cme09g00246
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02908 Cmo_Chr04 FPKM 5.021098 4.655895 3.564008 3.869169 9.378621 5.967608 10.9228 2.316379 2.361317 3.092808