Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02919 ATGGCTAAGAAAGACGACTCTGCACGACCTCCACTCCAGCGCCCCACCATCACTCTCCCTCCGCGCCCTTCTATGGACGCCTTTTTCGCTGCCGGACCCACTGGGCTTAGCCCTGGCCCTATGACCCTTGTCTCCAGTTTCTTCGCCGACGGTGCAGCTGACTCGCCTTCCTTCTCCCAGCTTCTCGCCGGAGCCATGGGTTCTCCGATGGCTATGGGGTTTCTGGGAACTGGGTCTACACCCAATTATTACGCCAAGGATGGAGGCAGCTCGGAATTGGAATTTGGGTTGAAGCAATCGAAGCCACTCAATTTGATGGTGGCTCGGTCTCCTTTGTTCTCGGTCCCGCCAGGGCTCAGCCCTTCTGGGTTGCTTAATTCGCCTGGCTTTTATGGTCCTCAGGTAAAATTGAACCAATTTGATTATTCAACTGGGTTTTGGTTAACCACTGGGGAGATGAGGAGCCCATTTGGAATGTCACACCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCGGCATTGACACATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTTAGTACCAGCTCCTATGGAACCGTTGACACGTGATCCATCGTTTACTCTTGATGAAGCTTCTCAACTGTCAGTATTACCCTCCACATCAGACACAAAAAGTATCATTGCAGAATCAACAGAAGTATCTCATTCTGATAGAAAATACCAACCTCCTCCTTCAAATGCCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATACGGACAGAAGCTGGTTAAGGGCAGTGAATATCCACGAAGCTACTACAAATGCACACATTTGAATTGCCCCGTCAAAAAGAAGATCGAGCGTTCGCCTGATGGTCAAATTACTGAAATTATTTACAAAGGTCAGCATAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCAACTGGGTGTACAAATTCTTTGACGAAGCCTGAAAGTAGATTCCAAATTCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGTTCTAGTGACAGTGAAGAACAAGCTGATACAGAGATAACAGAAAACAGAGATGAAGATGAACCAAATCCAAAGAGGCAGAACATTGATGTAGGGATATCTGGTGTTGCTTTGTCTCATAAAACACTCACAGAACCAAAAATCATTGTTCAAACTAGAAGCGAGGTCGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCCAGGAGCTACTACAAATGTACTAGTGCTGGGTGCAACGTCCGCAAGCATGTCGAGAGGTCTTCTACAGATTCGAAAGCTGTCGTAACCACATACGAAGGGAAACATAACCATGATGTCCCTGCAGCTAGAAACAGCAGCCACAACACCGTGCCCCAGATCAAACCGCTTAAGGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAGTTTGGAAGTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACTGTGTAA 1563 46.39 MAKKDDSARPPLQRPTITLPPRPSMDAFFAAGPTGLSPGPMTLVSSFFADGAADSPSFSQLLAGAMGSPMAMGFLGTGSTPNYYAKDGGSSELEFGLKQSKPLNLMVARSPLFSVPPGLSPSGLLNSPGFYGPQVKLNQFDYSTGFWLTTGEMRSPFGMSHQQALAQVTAQAALTHSHMHMQQAEYQHSLVPAPMEPLTRDPSFTLDEASQLSVLPSTSDTKSIIAESTEVSHSDRKYQPPPSNASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPTGCTNSLTKPESRFQIQAGILNKSSENVQLGSSDSEEQADTEITENRDEDEPNPKRQNIDVGISGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHNTVPQIKPLKVVAQKHPLLKEMEFGSNDQRPAVLRLKEEQITV 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20697081 20701413 - CmoCh04G029190.1 Cmo04g02919 381894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02919 520 SUPERFAMILY WRKY DNA-binding domain 248 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 SMART WRKY_cls 410 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 SMART WRKY_cls 250 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 9 519 IPR044810 GO:0003700
Cmo04g02919 520 Gene3D WRKY domain 395 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 Gene3D WRKY domain 242 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 ProSiteProfiles WRKY domain profile. 405 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 MobiDBLite consensus disorder prediction 301 383 - -
Cmo04g02919 520 Pfam WRKY DNA -binding domain 411 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 Pfam WRKY DNA -binding domain 251 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 PANTHER WRKY TRANSCRIPTION FACTOR 73 9 519 - -
Cmo04g02919 520 MobiDBLite consensus disorder prediction 228 255 - -
Cmo04g02919 520 MobiDBLite consensus disorder prediction 1 24 - -
Cmo04g02919 520 SUPERFAMILY WRKY DNA-binding domain 402 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 ProSiteProfiles WRKY domain profile. 245 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g02919 520 MobiDBLite consensus disorder prediction 318 358 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02919 Cmo15g00258 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02919 Cmo-Chr4:20697081 Cmo06g00665 Cmo-Chr6:3368431 1.59E-17 dispersed
Cmo15g00258 Cmo-Chr15:1248796 Cmo04g02919 Cmo-Chr4:20697081 0 wgd
Cmo18g01145 Cmo-Chr18:11701929 Cmo04g02919 Cmo-Chr4:20697081 2.72E-127 wgd
Cmo04g01766 Cmo-Chr4:8911214 Cmo04g02919 Cmo-Chr4:20697081 2.29E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9752 PF03106 WRKY 3.40E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02919 - - csv:101223114 899.042