Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02921 ATGAAGGCCAAATTGGTTTTCACTGCTCCTCCTCCAATTTCTACTACTCGTATCCCCAATCTCTCGAAACCCACTTCCGTTTTTGCCTCCCATGGTGGAAAGAATCGTGGGTTTTTGCCTCTCAATCTGAAATCGCTTCATGGAACCGCCCTTCGTTCTGTTCAAGCCTCTGCCGCGTCCGTTGGATCATCTCCAAAAGAAAGGGTGGACATCAGCGACAACTTGACCCTAGAGGCAATAAGACGCTCATTAATCTCTCAGGAGGACAGCATTATCTTTAGTCTCTTAGAGAGAGCTCAGTACTGCTACAATGGAGATACATATGACCCCAATGCTTTCTCCATGGATGGCTTTAGTGGCTCTTTGGTGGAGTACTTGGTCAAGGAAACTGAAAGGCTCCATGCTCAGGTGGGAAGATACAAGAGTCCTGATGAGCATCCTTTCTTCCCCGACGACCTACCCGCTCCGTTGTTGCCTCCGCTTCAGTACCCACAGGTACTACATCCTGTGGCGGATTCCATCAATATAAATAGCGAAGTATGGAGAATGTACTTCAATTCTCTGATACCAAGATTAGTCAAGGAAGGAGATGACGGCAATTATGGATCAACTGCTGTCTGTGACACGATGTGCTTGCAGGCTCTATCAAAGCGAATTCATTATGGAAAATTTGTGGCAGAAGCAAAGTTTCAAGAGTCACCAAATGAATATGGGGCTGCAATTAGGAAACAAGACAAGGAGAAGTTGATGGACATGCTAACGTTTCCGAGCGTCGAGGAGGCGATCAAAAGGAGAGTGGAAATGAAAGCGAAAACATTTGGGCAAGAGGTTCCTGTAAACATAGAGCAAAAACATGGTGCCCCAGTTTACAAAATTAAACCCAGTTTGGTTGCTCAACTTTATGGAGAATGGATCATGCCATTAACAAAGGAAGTTGAAGTTCAGTACTTACTCAGAAGATTGGACTGA 969 45.2 MKAKLVFTAPPPISTTRIPNLSKPTSVFASHGGKNRGFLPLNLKSLHGTALRSVQASAASVGSSPKERVDISDNLTLEAIRRSLISQEDSIIFSLLERAQYCYNGDTYDPNAFSMDGFSGSLVEYLVKETERLHAQVGRYKSPDEHPFFPDDLPAPLLPPLQYPQVLHPVADSININSEVWRMYFNSLIPRLVKEGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFQESPNEYGAAIRKQDKEKLMDMLTFPSVEEAIKRRVEMKAKTFGQEVPVNIEQKHGAPVYKIKPSLVAQLYGEWIMPLTKEVEVQYLLRRLD 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20709788 20712663 - CmoCh04G029210.1 Cmo04g02921 381896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02921 322 PANTHER CHORISMATE MUTASE 15 322 IPR008238 GO:0004106|GO:0009073
Cmo04g02921 322 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 68 322 IPR037039 GO:0004106|GO:0009073
Cmo04g02921 322 ProSiteProfiles Chorismate mutase domain profile. 68 322 IPR008238 GO:0004106|GO:0009073
Cmo04g02921 322 TIGRFAM CM_pl-yst: chorismate mutase 75 322 IPR008238 GO:0004106|GO:0009073
Cmo04g02921 322 SUPERFAMILY Chorismate mutase II 67 322 IPR036263 GO:0046417
Cmo04g02921 322 PANTHER CHORISMATE MUTASE 1, CHLOROPLASTIC 15 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02921 K01850 E5.4.99.5; chorismate mutase [EC:5.4.99.5] - csv:101203315 477.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02921 Cmo11g01200 CCT
Cmo04g02921 Cmo11g01200 ECH
Cmo04g02921 Cmo15g00257 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01715 Cmo-Chr1:12864992 Cmo04g02921 Cmo-Chr4:20709788 2.22E-91 dispersed
Cmo04g02921 Cmo-Chr4:20709788 Cmo09g00415 Cmo-Chr9:1814205 8.99E-100 dispersed
Cmo11g01200 Cmo-Chr11:7071659 Cmo04g02921 Cmo-Chr4:20709788 2.09E-87 transposed
Cmo15g00257 Cmo-Chr15:1246898 Cmo04g02921 Cmo-Chr4:20709788 4.24E-65 transposed
Cmo15g00256 Cmo-Chr15:1245063 Cmo04g02921 Cmo-Chr4:20709788 5.53E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02921 . . . . Car15g00248 Cpe13g00970 . . . . . . . . . . . . . . . . . Chy09g00214 .
Vvi14g1594 Blo10g00146 . . . . . Bma14g01444 Bma13g00173 . Cmo11g01200 . . Car11g00975 . Sed11g2034 . Cpe13g00970 Bhi06g00362 Tan11g0456 Cmetu09g1862 . Hepe02g2106 . Lcy10g2042 . . . . . . . . . Cone2ag0534 Cone16ag0482 . Csa05g03018 . . . . Bda07g01334 Bda12g00176 Bpe11g00065 Bpe11g01440 . . . Cmo04g02921 Cmo15g00257 Cma04g02789 Cma15g00247 Car04g02687 Car15g00248 Cpe04g00181 Cpe01g02416 Bhi11g02936 . . . . . . . . . . . . . . Csa03g03794 Chy09g00214 Cme09g00233
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001686 1 4 1 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 4 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02921 Cmo_Chr04 FPKM 29.262053 31.2561 18.914787 18.106606 16.632612 18.10462 17.597296 5.885169 5.208014 5.361053