Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02924 ATGGTGGTTCTGGTTCCTTCATTCTCCCCATGCCTTCTCTCCCTGGCTTCCCTTTCTCCTCTCCCATGTCTGTGGAGCGAGCTTTGCCTGAGGCGAGCCACCCCTTCACTCGATGTCCACGACAACATTAACAATACCACCACCGCTGCCGATGAACACCCCATCTCCAACGCCGTTGAGTGCTACGCCTGCACCCAAGTCGGTGTTCCGGCCTTCCATTCCACCAGCTGTGACCATGCCCACCAGCAGCCCGAATGGGAGGCCTCCGCCGGCTCTTCCCTCGTCCCCATCCAACCCGCAAAGACCTCTCCTCGCCGCGCCGACCCACAACATCGTTCCGGTCGTTTCGGCAGTGTTCTCGACCCTAGAACCAAGCGGGTCCAACGATGGAACCGGGCTCTGTTATTAGCCCGTGGAATGGCCCTCGCCGTCGATCCTCTCTACTTCTACGCGCTCTCAATCGGACGTGGTGGGTCGCCGTGCCTGTACATGGACGGTGGATTAACCGCCGTTGTTACTGTTCTCCGCACGTTCCTCGATGTCGTGCACTTGTGGCACGTTTGGCTCCAGTTCCGCCTCGCCTATGTGTCCAAGGAGAGCATGGTCATTGGCTGCGGCAAACTCGTCTGGGACGCTCGTGATATCGCCTCCCACTATGTCCGTTCCTTCAAAGGCTTCTGGTTCGATGCCTTCGTGATCCTCCCAGTTCCTCAGATTGTTTATTGGTTGGTTTTACCAAAACTAATCAGAGAAGAGAGAATCAAGCTTATAATGACAGTAATCTTGTTAATGTTCTTGTTCCAATTCCTCCCAAAAGTTTACCACTCCATTATTTTAATGACAAGAATGCAAAAGGTCACTGGATACATCTTTGGCACCATTTGGTGGGGTTTTGGACTCAATCTCATTGCCTATTTCATCGCCTCTCATGTTGCTGGGGGTTGCTGGTATGTTCTTGCAATACAGCGAGTTGCTTCTTGCATCCAGCAACATTGTGAGAGAAACAAGTGCAACCTATCTCTGTCTTGCTCAGAGGAGGTGTGTTATCAGTTTCTCTCATCTTCTACAACCATAGGAAATTCGTGTGGTCGTAATTCGACTTCTGCCTTTAGGAAGCCCATATGCTTGGATGTTAATGGTCCATTCGCCTATGGCATCTACAAGTGGGCTCTTCCAGTCATTTCTAGCAATTCCATTGCTGTCAAAATTCTTTATCCCATCTTTTGGGGCTTAATGACTCTTAGCACGTTTGGCAATGATCTCGAGCCCACGAGTAATTGGCTAGAAGTATGTTTTAGTATTTGCACAGTACTGAGTGGATTGCTGCTTTTTACTCTTTTGATTGGTAACATCCAGGTTCTTTTGCACGCCGTCATGGCAAGGAGGCGAAAAATGCAGCTGAGATGTCGAGATTTAGAGTGGTGGATGAGGAGACGACAATTGCCATCTCGTTTGAGACATCGAGTTCGACACTATGAACACCAGAGATGGGCAGCCATGGGTGGAGAAGATGAGATGGAACTGATCAATGATTTGCCTGAAGGTCTTAGAAGAGACATTAAACGCCATCTTTGCGTTGATCTTATCAGAAAGGTGCCGCTGTTCCAAAACCTGGATGAGCTGATTCTCGACAACATCTGCGACCGAGTCAAGCCACTTGTATTTTCCAAGGATGAAAAGATTATCAGAGAAGGAGATCCTGTTCCAAGAATGCTATTCATAGTGTGTGGACGTGTAAAACGTAACCAAAGCCTGAGCAAGGGCATGACAGCAACAAGTTTGCTAGAATCGGGAGGATTTCTGGGCGACGAGCTGCTATCGTGGTGTCTTCGGCGCCCATTTCTGGAGAGGCTTCCAGCTTCATCAGCTACATTTGTATGCATTGAACCAACAGAAGTATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGCTACAAATTTGCCAATGAACGACTGAAGAGAACTGCAAGATATTACTCCTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTTGCTTGGCGTCGCTACAGAAAGAGGATGAGACGTCCAGTGATAACTGTGGTGGAAAATGGAAGCAATGAACGTAGGCTTCTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG 2166 48.85 MVVLVPSFSPCLLSLASLSPLPCLWSELCLRRATPSLDVHDNINNTTTAADEHPISNAVECYACTQVGVPAFHSTSCDHAHQQPEWEASAGSSLVPIQPAKTSPRRADPQHRSGRFGSVLDPRTKRVQRWNRALLLARGMALAVDPLYFYALSIGRGGSPCLYMDGGLTAVVTVLRTFLDVVHLWHVWLQFRLAYVSKESMVIGCGKLVWDARDIASHYVRSFKGFWFDAFVILPVPQIVYWLVLPKLIREERIKLIMTVILLMFLFQFLPKVYHSIILMTRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCSEEVCYQFLSSSTTIGNSCGRNSTSAFRKPICLDVNGPFAYGIYKWALPVISSNSIAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLRHRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLDELILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRVKRNQSLSKGMTATSLLESGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEVFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVITVVENGSNERRLLQYAAMFMSFRPHDHLE 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20720536 20724404 - CmoCh04G029240.1 Cmo04g02924 381899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02924 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 60 721 - -
Cmo04g02924 721 SUPERFAMILY cAMP-binding domain-like 461 648 IPR018490 -
Cmo04g02924 721 Gene3D - 161 458 - -
Cmo04g02924 721 ProSiteProfiles cAMP/cGMP binding motif profile. 534 613 IPR000595 -
Cmo04g02924 721 SUPERFAMILY Voltage-gated potassium channels 122 455 - -
Cmo04g02924 721 CDD CAP_ED 534 641 IPR000595 -
Cmo04g02924 721 Gene3D Jelly Rolls 532 650 IPR014710 -
Cmo04g02924 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 60 721 - -
Cmo04g02924 721 Pfam Ion transport protein 138 453 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo04g02924 721 Gene3D Helix hairpin bin 460 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02924 Cmo-Chr4:20720536 Cmo16g00865 Cmo-Chr16:4610071 0 dispersed
Cmo04g02924 Cmo-Chr4:20720536 Cmo05g01050 Cmo-Chr5:8475255 3.44E-134 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02924 K05391 - csv:101203560 1285.4