Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g02944 | ATGGGTGCTGTCTGCTGCTGTTTGAGCATGGACGATTTTGAAGACTATGTCAATCCTAATAGTTCGGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAACGCCTACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGGGCGACATCCATGAGTTCTGCATCATCGACAGACAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCGAGGCGCGAGAAGGGTTCAAGCCATTTACATGAGGAGTCAGAACCTCTAAGAGGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAATGGATCTGCTTGTCTTGACGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGATCCCATCAACTAAATCTACCACTGGAGCAGGGTATGCTTATACATCTTCGGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGAATATACCTCAGAGAATCCCAAGATAGTGACAAAATGCTGTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTGTCGTGCGCCTTTTGCGGAGGGGCCACCCCTTGGGCACTTGTTGATCTCGTTTTGACCTCCTTCACTGGTGAAGCTTTGGGGAATGATCTTGAAACGCGATCCTTAGATGCTCATCTCTAA | 780 | 45.13 | MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGATSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRGEVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVSCAFCGGATPWALVDLVLTSFTGEALGNDLETRSLDAHL | 259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 20846871 | 20848902 | - | CmoCh04G029440.1 | Cmo04g02944 | 381919 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g02944 | 259 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - | |
| Cmo04g02944 | 259 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 224 | IPR013083 | - | |
| Cmo04g02944 | 259 | SUPERFAMILY | RING/U-box | 172 | 222 | - | - | |
| Cmo04g02944 | 259 | MobiDBLite | consensus disorder prediction | 103 | 123 | - | - | |
| Cmo04g02944 | 259 | MobiDBLite | consensus disorder prediction | 56 | 89 | - | - | |
| Cmo04g02944 | 259 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
| Cmo04g02944 | 259 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 221 | - | - | |
| Cmo04g02944 | 259 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 221 | - | - | |
| Cmo04g02944 | 259 | MobiDBLite | consensus disorder prediction | 103 | 129 | - | - | |
| Cmo04g02944 | 259 | MobiDBLite | consensus disorder prediction | 56 | 76 | - | - | |
| Cmo04g02944 | 259 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g02944 | Cmo15g00232 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02944 | Cmo-Chr4:20846871 | Cmo15g01303 | Cmo-Chr15:8944516 | 9.62E-27 | dispersed | |
| Cmo15g00232 | Cmo-Chr15:1153897 | Cmo04g02944 | Cmo-Chr4:20846871 | 2.26E-145 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g02944 | - | - | csv:101207736 | 411.764 |