Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02959 ATGGTTCTTCGTTTTATATTCTTCTTCAAAATTTCCGGTCTCAAAAGACAAGCATGCCTTTCTTTCCTCGTTAAACAATCAAACCCTTTTGAGGGTTTTGCCCATTTCCTTCTTCTTCTTCTTCAACCAGCCTCCATTTTCAGTGCCTTCTGGTGGTTTGTTCATGAGCATTTAATGGGTATGAGCAGAGCTGAGGCTACTGTTTCCTGTCTTGTGGCTTCTTTATTGCTTTGGGCTTCTGCAATAAATGGCTTGCTATCTCCCAAAGGTGTAAACTATGAAGTTCAAGCTCTGATGGGTATAAAAGCTTCCCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGACTCTGTTGACCCATGTAGCTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCCTAGGGACCCCAAGCCAGAACCTGTCTGGGACTCTTTCTTCAAGTGTTGGGAACTTGACAAACCTTCAAATTGTGCTGTTACAGAACAACAATATCACAGGCCCAATTCCCCCGGAGCTTGGGAGGCTCTCAAAGCTTCAAACACTTGATCTATCCAACAATGTCTTCACTGGGGACATTCCTTCTTCTTTAGCCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGCCTTTCTGGGGCAATTCCAATGGCTTTAGCTAACATGACCCACCTTGCATTTCTTGATGTATCATATAATAATATCAGTGGCCCTCTCCCCAGATTTCCCAGCAAAACATTCAACATTGTTGGAAATCCTCTGATCTGTGCGACCGGGACCGAGGCCGGTTGTCACGGGACGACTCTAATGCCCATGTCCATGAATTTGAACTCTACACAAACTGGTTTACCTTCTGTGAGATTGAAGAGTCACAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCTTATGTCTCATTGTTCTTGTATTTGGACTGTTTATATGGTGGAGAAGACGAAACAATCAACCGACGTTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATCTAAGAAGGTTCCAATTTAGAGAACTTCAGATAGCAACAAACAACTTCAACAGCAAGAACATACTAGGAAAGGGAGGCTTTGGGAATGTTTACAAAGGAATTCTTTCGGATGGAACGGTTGTAGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGTCGAGGCGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTCGCCGTGCACCGTCATCTCCTCAGGCTATACGGCTTCTGCAACACACCTACTGAAAGGCTTCTTGTTTACCCCTATATGTCTAATGGAAGCGTGGCCTCCCGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGAATAGCCATAGGAGCTGCAAGGGGATTGCTATACCTTCATGAACAATGTGATCCAAAGATAATACATAGAGACGTTAAGGCTGCAAACATCTTGCTCGACGACTACTGCGAGGCTGTTGTTGGAGATTTCGGGTTGGCAAAGCTTCTCGACCACCAAGATTCACATGTCACAACTGCCGTGAGAGGCACGGTGGGTCATATAGCTCCCGAGTATCTCTCCACCGGGCAGTCGTCGGAGAAAACAGACGTTTTCGGATTTGGAATCCTTCTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGATTGGGTAAAGAAGATTCACTTAGAGAAGAAGCTGGAAGTGCTAGTGGACAAGGATCTGAAAGCAAACTACGACAGAGTTGAGCTAGAAGAGATGGTTCAAGTGGCTCTGTTGTGCACACAATATCTACCAGGACACAGACCAAAGATGTCGGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTCAGATGGGAAGCTTCTCAGAGAGTTGATACCTCAAAGTGCAAACCCCACGACTTCTCTTCATCAGATAGATACTCTGATCTCACAGATGATTCATCGTTGTTGGTTCAAGCCATGGAGCTGTCTGGTCCAAGGAGTTTTAAAGTTTGGTGTATCATATTAGAATGTTCGTTCGAAGCTGTTTAA 2103 44.98 MVLRFIFFFKISGLKRQACLSFLVKQSNPFEGFAHFLLLLLQPASIFSAFWWFVHEHLMGMSRAEATVSCLVASLLLWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSSVGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNVFTGDIPSSLAHLRSLQYLRLNNNSLSGAIPMALANMTHLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGTEAGCHGTTLMPMSMNLNSTQTGLPSVRLKSHKMALTFGLSLACLCLIVLVFGLFIWWRRRNNQPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFNSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEVLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDTSKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPRSFKVWCIILECSFEAV 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20940568 20944247 - CmoCh04G029590.1 Cmo04g02959 381934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02959 700 SUPERFAMILY Protein kinase-like (PK-like) 340 634 IPR011009 -
Cmo04g02959 700 Pfam Protein kinase domain 365 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02959 700 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Cmo04g02959 700 Gene3D Transferase(Phosphotransferase) domain 1 441 653 - -
Cmo04g02959 700 SUPERFAMILY L domain-like 93 256 - -
Cmo04g02959 700 ProSiteProfiles Protein kinase domain profile. 364 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02959 700 Gene3D Ribonuclease Inhibitor 91 273 IPR032675 -
Cmo04g02959 700 Gene3D Phosphorylase Kinase; domain 1 333 440 - -
Cmo04g02959 700 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 67 684 - -
Cmo04g02959 700 SMART serkin_6 364 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02959 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Cmo04g02959 700 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 67 684 - -
Cmo04g02959 700 Pfam Leucine rich repeat 183 242 IPR001611 GO:0005515
Cmo04g02959 700 Pfam Leucine rich repeat N-terminal domain 92 131 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02959 Cmo15g00218 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02293 Cmo-Chr4:17046288 Cmo04g02959 Cmo-Chr4:20940568 0 dispersed
Cmo04g02959 Cmo-Chr4:20940568 Cmo18g01090 Cmo-Chr18:11413289 0 dispersed
Cmo12g00017 Cmo-Chr12:102001 Cmo04g02959 Cmo-Chr4:20940568 0 dispersed
Cmo15g00218 Cmo-Chr15:1057861 Cmo04g02959 Cmo-Chr4:20940568 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74329 PF00069 Pkinase 5.90E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02959 - - csv:101209443 1201.81