Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02967 ATGTGCGAGCTCAACATCGGCTCCAGCAAGTCGCACCCACGTTTTGTAAAACCGCCCCCCATTATTGTCACCAGAGGATATTTCTGGGGCTACCGAGTGGACTTCAGAGATCCCATTTTCGAGCTTCGGACTCGGTCGCAGAGGGGGATTTCATCGCTTCAGCGAGAGGGCTCTGTGAATTGGATTATGGCTTCTTCGCCTTCTCCGAGTGTTTCTCCTCCTGAGAATCCGTCAGATTCCGCATTTTTTTCACCTCCTTCTCCTTCTCCTCCGGCGGAATCCGCAATATCTCCGACATCTTCTGAGCCTAATCAGACCGGTGAACCTCCTTCTTCACCTTCTACTCCTTCAGCTCCACCTCCTCAATCACCACCAGCTGATGCTCCTCCTCCTTCTCCTCCACTGTCTCCTCCACCATTGACAGCATCACCACCTGCACCACCTGAATCCCCACCTCCTCCACCACCACCTTCGCCTCCTTTATCTTCGCCGTCGCCACCATCAACCTCTGCACCACCACCTTCAACATCAACCTCTCCTCCACCACCACCACCACCAACTTCCTCTGCATCACCACCTCCTCCAGATCAATCCACTGCCTCTCCTCCTCGTGATGCTTCTCCTTCGCCTCCTGATTTAACGACGTCGCCGCCTCCACCACCAGCAGCAGACAATTCTCCACCTCCTCAATCTAATCCTAGTCCTCCACCTTCAACTTCCTCTCCTCCTCCCCCTGACATAACTTCAGCTTCTCCACCTCCACCTTCTAAGGCCCCAACACCACCTTCACCGAAGGGAGAGTCGCCTAATGTATCTCCCCCAGCCCCCAAGGTTTCTCCTCCTCCTTCTGATTTTCAATCTCCACCATCAGTTGAGGTCCCCCCACCAAGATCCTCAGTTCCATCACCTCCTCCTTCAGTCCCTTCATCATCTACTCCTCCTCCAGTTACTCTTCCTGGTTCTCCATCTAATTCATCCGCTGAAGGCCCCATTAGCCCTCCAACTTCTGGTATACCCGAACGACCGATTCCAACAATGAATGGTACTGACATCACAGCAAAGAAAGGGGGTCTCAACACCGGAACATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGGTATGTGGTTTGTTCTGAAACGGAAGAGAAGAAAGAAGAGTATCCCTTACGCCATGCCTTCTCCTTTTTCCTCCCAAAACTCAGATTCAATTTTCTTAAGGCCCCATTCTTCAGCTCCCATGGCAGGCAGTCGTACCGATAGTGAATTCAAGTATTCATCATCTGAAGGAGGTGGAGTAGGTAATTCAAGATCATTTCCTTATGAAGAGCTACACCAGGCAACGAGTGGATTTTCGTCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTACAAAGGCACCCTTGCAGATGGTAGAGAGGTAGCCGTTAAACAACTTAAAGTGGGTGGTGGTCAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTCGGTTACTGTATTTCTGATTATCAAAGATTGCTCGTCTATGATTATGTTCCAAACAATACCCTTCATTACCATCTGCACGATGCGAACAGGCCTGTTTTAGCTTGGGCTACACGTGTTCGAATCGCTGCTGGTGCAGCCCGTGGAATTGCTTACCTACATGAAGATTGCCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTCGATATCAACTTCGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCATTGGATTCGCATACACATGTAACGACTCGTGTAATGGGAACCTTTGGATACATGGCTCCAGAATACGCAACAAGTGGGAAATTGACAGACAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTAATTACCGGTCGCAAGCCTGTAGATTCTTCTCAGCCTTTAGGGGACGAGAGCTTAGTCGAATGGGCTCGACCGTTGCTGGCACAAGCTATCGAGGACGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGAGAACAGTTACGTTGACAGAGAAATGTTTCGGATGATCGAAGCAGCCGCCGCATGCGTTCGTCATTCGGGAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCATTAGATGAAATGTGTGATCTCGCAAATGGGGTGAAACCTGGGCAAAGTGGAGTGTTTAATTCAGCTGAACATTCTGCTCAGATCAGAATGTTTCAAAGAATGGCTTTTGGGAGTCAAGATTACAGCTATGGTTACTCGGATCGAGATCGAAGTCGGAGTTACAGTCAAACTCCGAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGCCCGTCGGCGCCTATGAATCGATCCCGACAATGGAACATCTGA 2448 49.18 MCELNIGSSKSHPRFVKPPPIIVTRGYFWGYRVDFRDPIFELRTRSQRGISSLQREGSVNWIMASSPSPSVSPPENPSDSAFFSPPSPSPPAESAISPTSSEPNQTGEPPSSPSTPSAPPPQSPPADAPPPSPPLSPPPLTASPPAPPESPPPPPPPSPPLSSPSPPSTSAPPPSTSTSPPPPPPPTSSASPPPPDQSTASPPRDASPSPPDLTTSPPPPPAADNSPPPQSNPSPPPSTSSPPPPDITSASPPPPSKAPTPPSPKGESPNVSPPAPKVSPPPSDFQSPPSVEVPPPRSSVPSPPPSVPSSSTPPPVTLPGSPSNSSAEGPISPPTSGIPERPIPTMNGTDITAKKGGLNTGTSVAVGSVVGVLVLSLVIMGMWFVLKRKRRKKSIPYAMPSPFSSQNSDSIFLRPHSSAPMAGSRTDSEFKYSSSEGGGVGNSRSFPYEELHQATSGFSSNNLLGEGGFGCVYKGTLADGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHDANRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLENSYVDREMFRMIEAAAACVRHSGVKRPRMSQVVRALDSLDEMCDLANGVKPGQSGVFNSAEHSAQIRMFQRMAFGSQDYSYGYSDRDRSRSYSQTPSSWSRESRDQSPSAPMNRSRQWNI 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20986231 20990856 + CmoCh04G029670.1 Cmo04g02967 381942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02967 815 Gene3D Phosphorylase Kinase; domain 1 430 533 - -
Cmo04g02967 815 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 198 782 - -
Cmo04g02967 815 MobiDBLite consensus disorder prediction 399 414 - -
Cmo04g02967 815 MobiDBLite consensus disorder prediction 64 362 - -
Cmo04g02967 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Cmo04g02967 815 MobiDBLite consensus disorder prediction 781 815 - -
Cmo04g02967 815 Pfam Protein tyrosine and serine/threonine kinase 461 731 IPR001245 GO:0004672|GO:0006468
Cmo04g02967 815 MobiDBLite consensus disorder prediction 94 108 - -
Cmo04g02967 815 MobiDBLite consensus disorder prediction 109 320 - -
Cmo04g02967 815 SMART serkin_6 458 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02967 815 MobiDBLite consensus disorder prediction 70 93 - -
Cmo04g02967 815 ProSitePatterns Protein kinases ATP-binding region signature. 464 486 IPR017441 GO:0005524
Cmo04g02967 815 ProSiteProfiles Protein kinase domain profile. 458 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02967 815 SUPERFAMILY Protein kinase-like (PK-like) 440 731 IPR011009 -
Cmo04g02967 815 MobiDBLite consensus disorder prediction 421 441 - -
Cmo04g02967 815 MobiDBLite consensus disorder prediction 776 815 - -
Cmo04g02967 815 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 198 782 - -
Cmo04g02967 815 PRINTS Proline rich extensin signature 103 119 - -
Cmo04g02967 815 PRINTS Proline rich extensin signature 139 164 - -
Cmo04g02967 815 PRINTS Proline rich extensin signature 70 91 - -
Cmo04g02967 815 PRINTS Proline rich extensin signature 121 138 - -
Cmo04g02967 815 MobiDBLite consensus disorder prediction 397 443 - -
Cmo04g02967 815 Gene3D Transferase(Phosphotransferase) domain 1 534 744 - -
Cmo04g02967 815 CDD STKc_IRAK 464 734 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02967 Cmo15g00209 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02967 Cmo-Chr4:20986231 Cmo18g00802 Cmo-Chr18:9482250 1.24E-158 dispersed
Cmo15g00209 Cmo-Chr15:1017698 Cmo04g02967 Cmo-Chr4:20986231 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74330 PF07714 PK_Tyr_Ser-Thr 1.40E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02967 - - csv:101211665 848.58