Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02996 ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACATGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGATAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGGGATGATATGCCAAAGCCTGGACAGCCAGGACAGGCCCCTCGCGTTGGTGCTGGAGCTGGAGCTCCTCCTCCCCGTCCCTGA 396 52.27 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRVGAGAGAPPPRP 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21102628 21104724 + CmoCh04G029960.1 Cmo04g02996 381971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02996 131 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cmo04g02996 131 Pfam Ribosomal protein S26e 1 105 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cmo04g02996 131 PANTHER 40S RIBOSOMAL PROTEIN S26 1 126 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cmo04g02996 131 PANTHER 40S RIBOSOMAL PROTEIN S26 1 126 - -
Cmo04g02996 131 Gene3D Ribosomal protein S26e 1 114 IPR038551 -
Cmo04g02996 131 MobiDBLite consensus disorder prediction 86 131 - -
Cmo04g02996 131 MobiDBLite consensus disorder prediction 90 110 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01134 Cmo04g02996 CCT
Cmo04g00104 Cmo04g02996 CCT
Cmo04g01134 Cmo04g02996 ECH
Cmo04g02996 Cmo04g00104 ECH
Cmo04g02996 Cmo04g01134 ECH
Cmo04g00104 Cmo04g02996 ECH
Cmo04g02996 Cmo15g00176 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00176 Cmo-Chr15:805944 Cmo04g02996 Cmo-Chr4:21102628 8.96E-89 wgd
Cmo04g01134 Cmo-Chr4:5780497 Cmo04g02996 Cmo-Chr4:21102628 2.12E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02996 K02976 - csv:101217730 216.083