Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g03016 TCATTCCCATCTTCCACATCTTCTCCCTATATAATCTCCATTTCTCCACCCCCATCTCTTCGTATCCATCGCTGCCGCATTTGTTCTTCGTATCCACAGCTATCACCCATGGCGCCGCCTTCACTCACTCTTCATCTGTTTGGCGTTTTGCTTCTATTTTCCTCGGCGGCATTGTCCTTGGCCCACCCACTAACACATCGCCATCAATTTGTTATTCAAGCTACCCCAGTGAAGAGGCTGTGCAAAACCCACAATGCCATTACGGTGAATGGCCAGTTCCCTGGGCCGACATTGGAGGTCAACAATGGTGATACTCTCATTGTCACTGTTATTAACAAAGCCAAGTACAACGCGACAATTCATTGGCATGGAATCAGGCAGTTACGAACTGGTTGGGCTGATGGACCTGAATTTGTGACTCAATGTCCTATCAGACCCGGAGGAAGCTATACTTATAAATTCACCGTAGAAGGACAAGAAGGGACTCTATGGTGGCATGCACATAGCTCATGGCTTCGTGCCACGGTTTACGGAGCCTTAATCATCCGCCCTAGACAGGGAGATTCCTACCCTTTTGCCAAGCCAAACCGCGAAGCAATACTTCTAATGGGTGAGTGGTGGGATGCAAACCCCATTGACGTAGTGAGACAGGCCACAAGAACAGGAGCGGCTCCCAATGTCTCTGATGCTTTCACTTTCAATGGTCAACCCGGTGACCTTTACAAGTGCTCTAGCCGAGGTGAATTTTATACTGTAATTGTGCCCATCGATTCCGGCGAGACCAATTTGCTGAGAGTGGTGAACTCCGGCCTGAACCAGCCGCTTTTTTTCACGGTGGCGAACCACAAACTGACGGTGGTAGGAGCCGATGCTTCCTACACAAAGCCCTTCACAACCTCTGTTTTGATGCTTGGCCCAGGCCAAACCACCGACGTTTTAATCTCCGGCGATCAGGTCCCTTCCCGGTACTACATAGCGGCACGTGCGTACCAAAGCGCTCAAAACGCACCGTTCGACAACACCACCACGACTGCCATTCTCAACTACAAATCTGCCCCTTGCTCCGCCAAGAAAGGCGGCGTGTCGATTAAACCACTCATGCCTCCGCTCCCTGCCTACAACGACACCGCCACCGTCACCGCCTTCAGCCGGAGTTTTCGTAGCCCTCGACCCGTCCCAGTCCCGAAGGAAATCGACGAGAATCTGTTCTTCACCATCGGATTGGGACTCAACAATTGCCCACGTAATTTCAAACCCAGCCAATGCCAAGGCCCCAACGGAACCCGCTTCACAGCCAGTATGAACAATGTCTCATTCGTACTTCCTTCCAACATCTCAATTCTTCAAGCCTTCCAACAGAGGATTCCCGGCGTCATCACCCCTGATTTTCCGGCCAACCCGCCGGTGAAATTCGATTACACCGGCAACGTCAGCCAGTCACTTTTTCAACCGATTCCCGGTACTAAAGGTTACAGATTAAAATACGGGTCGACAGTACAAGTCGTGTTACAAGACACTAGCATTGTAACGCCTGAAAATCACCCGATTCATCTCCATGGTTACGATTTTTACATAATCGCCGAGGGATTCGGAAATTTCAACCCCAAAACTGATACTAAAAAATTCAACCTCGTTGACCCTCCTCTTAGAAACACCGTCGCCGTCCCCGTCAACGGCTGGGCCGTCATCCGATTCGTCGCCGATAACCCAGATCGAAAGGAGTTCTTCGTCTCGCATGACAGTAGAGATAGCTCAGAGGAAGCTGCAATTACTTGTTGTCGCGTTAGTTTTGTTTACCTGGGGCTCAAGAAACCAGTGGGTTTTAATCATACGAACCGCTCTAAGTTTTTTTGTTCTTGCTTAGGGAGTTGTAATTATCCAGGGGCGAGGCAATCAGCACTTTGTTTTCTGATTTCTTCAATTTCGGTTCAAAATTGTCCAAAAATGAGTCTGGGTGATCGATATTCTGACGCAATTTCTTTACCTACCAAACGAATTAGGAAGAGGAAGTCACGGAGTAGACGAGATCCATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAGGCTTATAATGAATGTGTTAATTCTTGTGATGATGGAAGCAAGCCAATACGTAAAGCTCCAGCGAAAGGATCTAAGAAGGGATGTATGAAAGGTAAAGGTGGACCCATGAATTCAAATTGTAAATACAGAGGTGTGAGGCAGAGGACTTGGGGGAAATGGGTTGCGGAGATTCGTGAGCCGGATAGAGGTAGTAGGCTGTGGCTTGGTACTTTCTCTAATGCCATTGAAGCTGCTCTCGCCTATGACGAGGCTGCCAGGACCATGTATGGCCAGACTGCTCGTTTGAACCTTCCCAACATTACAAACACACGGCTGCTAGCAGGCTCTGCCTCGGATTCTTCAACCACCACGTCGACGACAACCACATCATCGAACCAATCTGATGTCTGTGTGTCTGAGGAGCTTACAATGACGCCACAACCTGTCCCCCCAGACGTTAAGATCGAAGGTGAGCCGAGGACCGGGTTCCCGGTTGATCACGTTGCGACATCGGCGATCGATGCTAAATTTTGTGACCAAGGCAATGATCAGGCAGCTCTGTTAGGGATTGAATTTCCCAGTATGGATCACTTCCCGAACTTTCAAATGGACGAAATGTTCGAGTTGAGGACTAGTGACATTGCAATCCCGGTGAGCTTAGAGAAGAAATTTCAAATGGACGAAATGTTCGAGTTGAGGACTAGTGACATTGCAATCCCGGTGAGCTTAGAGAAGAAAGTGAAGCATGAAAGTGTTGATGGCGATGACGAATATCCCGATCGGAGCAGTGATCCATTCGACATCCAGGATGTGCTGCAGGACTTTCAAATAGATGAAATGTTCGATGTGGAGGAGCTTCTAAGCATTATAAATAGTGATTCCATGCATGATCAAAGCTTCTTGCAAGGGAATGTGTATGATTCTAACAACATGGTGCCTCCCCAACCATCAAGCTCGTCGAATCAGTTCCGATACCCCGACGAGAAGCTGCTCGGAAGCCTTCAACACATGGAGCAACCTCCAGCCGACGTCAATCATGGGTTCGATTTCTTGAATGAGGGGAGGGAGGAGGATCTGAATGCTGCAACAGATGATTTCGCAAGATACTTGAATTATGAGATGGGTGGTTTGGGTTTCTGA 3183 48.7 SFPSSTSSPYIISISPPPSLRIHRCRICSSYPQLSPMAPPSLTLHLFGVLLLFSSAALSLAHPLTHRHQFVIQATPVKRLCKTHNAITVNGQFPGPTLEVNNGDTLIVTVINKAKYNATIHWHGIRQLRTGWADGPEFVTQCPIRPGGSYTYKFTVEGQEGTLWWHAHSSWLRATVYGALIIRPRQGDSYPFAKPNREAILLMGEWWDANPIDVVRQATRTGAAPNVSDAFTFNGQPGDLYKCSSRGEFYTVIVPIDSGETNLLRVVNSGLNQPLFFTVANHKLTVVGADASYTKPFTTSVLMLGPGQTTDVLISGDQVPSRYYIAARAYQSAQNAPFDNTTTTAILNYKSAPCSAKKGGVSIKPLMPPLPAYNDTATVTAFSRSFRSPRPVPVPKEIDENLFFTIGLGLNNCPRNFKPSQCQGPNGTRFTASMNNVSFVLPSNISILQAFQQRIPGVITPDFPANPPVKFDYTGNVSQSLFQPIPGTKGYRLKYGSTVQVVLQDTSIVTPENHPIHLHGYDFYIIAEGFGNFNPKTDTKKFNLVDPPLRNTVAVPVNGWAVIRFVADNPDRKEFFVSHDSRDSSEEAAITCCRVSFVYLGLKKPVGFNHTNRSKFFCSCLGSCNYPGARQSALCFLISSISVQNCPKMSLGDRYSDAISLPTKRIRKRKSRSRRDPSTVAETLAKWKAYNECVNSCDDGSKPIRKAPAKGSKKGCMKGKGGPMNSNCKYRGVRQRTWGKWVAEIREPDRGSRLWLGTFSNAIEAALAYDEAARTMYGQTARLNLPNITNTRLLAGSASDSSTTTSTTTTSSNQSDVCVSEELTMTPQPVPPDVKIEGEPRTGFPVDHVATSAIDAKFCDQGNDQAALLGIEFPSMDHFPNFQMDEMFELRTSDIAIPVSLEKKFQMDEMFELRTSDIAIPVSLEKKVKHESVDGDDEYPDRSSDPFDIQDVLQDFQIDEMFDVEELLSIINSDSMHDQSFLQGNVYDSNNMVPPQPSSSSNQFRYPDEKLLGSLQHMEQPPADVNHGFDFLNEGREEDLNAATDDFARYLNYEMGGLGF 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21184855 21190821 + CmoCh04G030160.1 Cmo04g03016 381991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g03016 1060 MobiDBLite consensus disorder prediction 796 817 - -
Cmo04g03016 1060 SUPERFAMILY Cupredoxins 64 211 IPR008972 -
Cmo04g03016 1060 CDD CuRO_1_LCC_plant 68 184 IPR034288 GO:0005507
Cmo04g03016 1060 PANTHER LACCASE 41 571 - -
Cmo04g03016 1060 PANTHER MULTI-COPPER OXIDASE 41 571 IPR045087 -
Cmo04g03016 1060 Pfam Multicopper oxidase 72 186 IPR011707 GO:0005507
Cmo04g03016 1060 Pfam Multicopper oxidase 463 572 IPR011706 GO:0005507|GO:0016491
Cmo04g03016 1060 SUPERFAMILY Cupredoxins 390 570 IPR008972 -
Cmo04g03016 1060 CDD AP2 728 787 IPR001471 GO:0003700|GO:0006355
Cmo04g03016 1060 ProSiteProfiles AP2/ERF domain profile. 729 786 IPR001471 GO:0003700|GO:0006355
Cmo04g03016 1060 Pfam AP2 domain 728 778 IPR001471 GO:0003700|GO:0006355
Cmo04g03016 1060 PRINTS Ethylene responsive element binding protein signature 752 768 IPR001471 GO:0003700|GO:0006355
Cmo04g03016 1060 PRINTS Ethylene responsive element binding protein signature 730 741 IPR001471 GO:0003700|GO:0006355
Cmo04g03016 1060 Pfam Multicopper oxidase 199 351 IPR001117 -
Cmo04g03016 1060 SUPERFAMILY Cupredoxins 192 392 IPR008972 -
Cmo04g03016 1060 Gene3D AP2/ERF domain 728 787 IPR036955 GO:0003700|GO:0006355
Cmo04g03016 1060 Gene3D - 197 391 IPR008972 -
Cmo04g03016 1060 TIGRFAM laccase: laccase 65 570 IPR017761 GO:0046274|GO:0048046|GO:0052716
Cmo04g03016 1060 SUPERFAMILY DNA-binding domain 729 786 IPR016177 GO:0003677
Cmo04g03016 1060 Gene3D - 411 579 IPR008972 -
Cmo04g03016 1060 Gene3D - 67 196 IPR008972 -
Cmo04g03016 1060 CDD CuRO_2_LCC_plant 201 349 IPR034285 -
Cmo04g03016 1060 SMART rav1_2 729 792 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g03016 Cmo15g00161 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03016 Cmo-Chr4:21184855 Cmo13g00023 Cmo-Chr13:185410 0 dispersed
Cmo20g00602 Cmo-Chr20:2956077 Cmo04g03016 Cmo-Chr4:21184855 4.58E-42 dispersed
Cmo15g00161 Cmo-Chr15:740796 Cmo04g03016 Cmo-Chr4:21184855 0 transposed
Cmo15g00160 Cmo-Chr15:737528 Cmo04g03016 Cmo-Chr4:21184855 1.43E-113 wgd
Cmo03g00335 Cmo-Chr3:4461152 Cmo04g03016 Cmo-Chr4:21184855 9.09E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9756 PF00394 Cu-oxidase 2.90E-37 CL0026 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g03016 K05909 - csv:101221525 983.4