Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g03037 ATGGCGACGACTGAGAGCACGGTTTTGCAATTTTCACAGTCTTCTAACTCTTTGTCTGCCAAGGTTCATCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCCGACCAGGCGGATCGAGTGATCGGCACACTTCTTGGCTCTGTTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCCGATCAGGTTGCGCTGGATATTGATTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTATGGGAGTTACGGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTTCAAACCCTATTCACCTGACTGTTGATACTGGATTTAAAAATGGAGAAGGCACAATAAAAGCCTACATCTCTGTCAATTTGTCTCTGGGTGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTATTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTCGCCTTAATTGATGATATTTACAAATATGTTGATAATGTTGTGGAAGGACATGTTGAGCCAGACAACACGATTGGGAGATTTCTTGCTGAGACTGTAGCCTCTCTTCCAAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACACAACTGAGCTTGGCTGAAAAGTTGAACACGGCTGCTCAGATTCTGTAA 858 41.72 MATTESTVLQFSQSSNSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGMGVTGGSALIHEFYSREVSNPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSIDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEPDNTIGRFLAETVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21297835 21301214 + CmoCh04G030370.1 Cmo04g03037 382012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g03037 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo04g03037 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo04g03037 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Cmo04g03037 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmo04g03037 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 13 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo04g03037 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Cmo04g03037 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 284 - -
Cmo04g03037 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmo04g03037 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01195 Cmo04g03037 CCT
Cmo04g00164 Cmo04g03037 CCT
Cmo04g03037 Cmo15g00136 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03037 Cmo-Chr4:21297835 Cmo07g01113 Cmo-Chr7:5878507 1.03E-19 dispersed
Cmo14g00074 Cmo-Chr14:368145 Cmo04g03037 Cmo-Chr4:21297835 1.16E-32 wgd
Cmo15g00136 Cmo-Chr15:637226 Cmo04g03037 Cmo-Chr4:21297835 0 wgd
Cmo04g03037 Cmo-Chr4:21297835 Cmo06g00232 Cmo-Chr6:1239145 8.25E-33 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g03037 K03249 - csv:101205957 549.28