Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g03037 | ATGGCGACGACTGAGAGCACGGTTTTGCAATTTTCACAGTCTTCTAACTCTTTGTCTGCCAAGGTTCATCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCCGACCAGGCGGATCGAGTGATCGGCACACTTCTTGGCTCTGTTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCCGATCAGGTTGCGCTGGATATTGATTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTATGGGAGTTACGGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTTCAAACCCTATTCACCTGACTGTTGATACTGGATTTAAAAATGGAGAAGGCACAATAAAAGCCTACATCTCTGTCAATTTGTCTCTGGGTGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTATTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTCGCCTTAATTGATGATATTTACAAATATGTTGATAATGTTGTGGAAGGACATGTTGAGCCAGACAACACGATTGGGAGATTTCTTGCTGAGACTGTAGCCTCTCTTCCAAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACACAACTGAGCTTGGCTGAAAAGTTGAACACGGCTGCTCAGATTCTGTAA | 858 | 41.72 | MATTESTVLQFSQSSNSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGMGVTGGSALIHEFYSREVSNPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSIDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEPDNTIGRFLAETVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21297835 | 21301214 | + | CmoCh04G030370.1 | Cmo04g03037 | 382012 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g03037 | 285 | CDD | MPN_eIF3f | 21 | 278 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cmo04g03037 | 285 | Hamap | Eukaryotic translation initiation factor 3 subunit F [EIF3F]. | 18 | 281 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cmo04g03037 | 285 | Gene3D | Cytidine Deaminase, domain 2 | 7 | 186 | - | - | |
Cmo04g03037 | 285 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 18 | 121 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Cmo04g03037 | 285 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F | 13 | 284 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cmo04g03037 | 285 | Pfam | Maintenance of mitochondrial structure and function | 172 | 278 | IPR024969 | - | |
Cmo04g03037 | 285 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 13 | 284 | - | - | |
Cmo04g03037 | 285 | SMART | pad1_6 | 19 | 150 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Cmo04g03037 | 285 | ProSiteProfiles | MPN domain profile. | 20 | 151 | IPR037518 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01195 | Cmo04g03037 | CCT | |
Cmo04g00164 | Cmo04g03037 | CCT | |
Cmo04g03037 | Cmo15g00136 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g03037 | Cmo-Chr4:21297835 | Cmo07g01113 | Cmo-Chr7:5878507 | 1.03E-19 | dispersed | |
Cmo14g00074 | Cmo-Chr14:368145 | Cmo04g03037 | Cmo-Chr4:21297835 | 1.16E-32 | wgd | |
Cmo15g00136 | Cmo-Chr15:637226 | Cmo04g03037 | Cmo-Chr4:21297835 | 0 | wgd | |
Cmo04g03037 | Cmo-Chr4:21297835 | Cmo06g00232 | Cmo-Chr6:1239145 | 8.25E-33 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g03037 | K03249 | - | csv:101205957 | 549.28 |