Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g03049 ATGTCCACAATCGAAGACACCCACGTTGTCGCAATGGAAGAAGAGAAAGAAGAGCGGCCTTCCCGGGTTTCTACAGCTGGGACTGCCGCTTCACCGGCGTCTGATGATGTGCGGCGGTGCTCGGTCCAGTCGAGTGCTGAGATTGTGGGGGCGGCGGCGGTGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTGGAATGTGGGTTAGGTGAGATTAAGGTACATTTGGCGAAAATGGAGAGAGATTGCCGTATTTGTCATCTGAGCTTGGATGCTACGAATCATGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGGTTAAGGGTGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTTGTGAAGCTGATTCGACCGAGCAGTGCAATGAGTCGAACGATGGAACGACAGCAACCACTGCAGCTGCTGTCGTGGTGCCACCGCACTCTACAGAGGCTCGAAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTGCTTGCTTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA 651 50.54 MSTIEDTHVVAMEEEKEERPSRVSTAGTAASPASDDVRRCSVQSSAEIVGAAAVEKRRGSSVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAAHKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAAVVVPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21346815 21349613 + CmoCh04G030490.1 Cmo04g03049 382024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g03049 216 MobiDBLite consensus disorder prediction 1 35 - -
Cmo04g03049 216 ProSiteProfiles Zinc finger RING-CH-type profile. 81 147 IPR011016 GO:0008270
Cmo04g03049 216 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 216 - -
Cmo04g03049 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 155 IPR013083 -
Cmo04g03049 216 PANTHER ZINC FINGER, RING-CH-TYPE 3 216 - -
Cmo04g03049 216 SUPERFAMILY RING/U-box 86 143 - -
Cmo04g03049 216 SMART ringv_2 88 141 IPR011016 GO:0008270
Cmo04g03049 216 MobiDBLite consensus disorder prediction 8 22 - -
Cmo04g03049 216 Pfam RING-variant domain 89 140 IPR011016 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g03049 Cmo15g00126 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03049 Cmo-Chr4:21346815 Cmo13g00088 Cmo-Chr13:532189 4.54E-47 dispersed
Cmo14g00095 Cmo-Chr14:448197 Cmo04g03049 Cmo-Chr4:21346815 1.01E-60 wgd
Cmo15g00126 Cmo-Chr15:602427 Cmo04g03049 Cmo-Chr4:21346815 3.70E-123 wgd
Cmo04g03049 Cmo-Chr4:21346815 Cmo06g00261 Cmo-Chr6:1331216 5.27E-77 wgd
Cmo04g03049 Cmo-Chr4:21346815 Cmo07g01079 Cmo-Chr7:5607475 2.00E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g03049 - - cpep:111788319 420.624