Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g03067 ATGACTAGAATTTCATTTGGCTTGAACCAAAGCTCTAAATCATTAGATGGGGACAATGCTTCGTCGAGCATGGCTAATCCCCATGGGGATGAGCTTGTTGCCCTTGATCAAGCAAGAACAGAGGCTCCTCCCCTTCTCCCTTTTGCTCTAAAACAGACTTCTTTTTCGAAGTCCAAGGATATGGCGAGTAGATGGTGGAGTGGAATGGGAATTGAAGATCAGCATGGAGCTAAAATCCACAGGCGCCGTCGAGGTCGCCCACCGGGCTCAAAAAACAAGCCAAGGCCACCCATTCTCATAACCAACCACGCTCCCAACGCCTTCCAAACCCACGTATTCCAAATCACCCCCGCCACCGACATAGTCCATTCCATTTCCACCTTCGCCCACCGCCGCCACTGCGGACTCTCCATTCTCAGCAGCTCCGGCCTCGTCGCCAACGTCACTCTCCGCCAACCCGCTGCCCCTGGCGGCGTCATCACTCTCCATGAACGCTTCGAGATCTTGTCACTCTCTGGCGCTTTCCTTCCCGCACCGTCCCCCCAGTGGGCTACTAGCTTGACCGTCTGTCTAGCCGGTGGCCAGGGACGGGTCGTCGGCGGCCTGGTTTCCGGTCCCCTCATCGCCGCCGGCCCTGTGATAGTAATTGCAGCTTCGTTTACAAACGCTATATATGAAAGATTACAGCTTGAGGAAATGGAAATGGAAGATCATAGTAATGGAAAAAATTCAATGGGGGAATCATCAGGAGGAGCTTCTTTGGCAGTTCATAATTTGATTTCAAATACCCAAATTTCTCAAGATGTGTTTTGGGCTCAACTTCCTCCATCGTATTAA 837 51.73 MTRISFGLNQSSKSLDGDNASSSMANPHGDELVALDQARTEAPPLLPFALKQTSFSKSKDMASRWWSGMGIEDQHGAKIHRRRRGRPPGSKNKPRPPILITNHAPNAFQTHVFQITPATDIVHSISTFAHRRHCGLSILSSSGLVANVTLRQPAAPGGVITLHERFEILSLSGAFLPAPSPQWATSLTVCLAGGQGRVVGGLVSGPLIAAGPVIVIAASFTNAIYERLQLEEMEMEDHSNGKNSMGESSGGASLAVHNLISNTQISQDVFWAQLPPSY 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21427943 21429239 + CmoCh04G030670.1 Cmo04g03067 382042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g03067 278 MobiDBLite consensus disorder prediction 73 97 - -
Cmo04g03067 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 60 241 IPR014476 GO:0003680
Cmo04g03067 278 MobiDBLite consensus disorder prediction 1 26 - -
Cmo04g03067 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 60 241 - -
Cmo04g03067 278 CDD DUF296 109 220 IPR005175 -
Cmo04g03067 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 110 222 IPR005175 -
Cmo04g03067 278 MobiDBLite consensus disorder prediction 1 28 - -
Cmo04g03067 278 Gene3D - 109 241 - -
Cmo04g03067 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 234 - -
Cmo04g03067 278 ProSiteProfiles PPC domain profile profile. 105 241 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00202 Cmo04g03067 CCT
Cmo04g01239 Cmo04g03067 CCT
Cmo04g03067 Cmo15g00111 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03067 Cmo-Chr4:21427943 Cmo06g01155 Cmo-Chr6:8855557 2.40E-55 dispersed
Cmo15g00111 Cmo-Chr15:536548 Cmo04g03067 Cmo-Chr4:21427943 5.61E-92 wgd
Cmo04g01239 Cmo-Chr4:6293402 Cmo04g03067 Cmo-Chr4:21427943 6.88E-68 wgd
Cmo04g00202 Cmo-Chr4:1004403 Cmo04g03067 Cmo-Chr4:21427943 4.28E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g03067 - - cmos:111457545 442.965