Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g03071 ATGAACTTCTTCCTCCACCTCCTGCAACTCCTCGTCTTCCTCCTCTGTTTCAAGCAGAGTCTCTGTTTTTGTGCAACTCAGGCGATGGTTTTGCCACTCAAAACAGAGACGGGATTGAATTCACAGCCGTCGAACAAACTCAGTTTCCACCATAATGTCACGTTGACCGTTGAGTTGACTGTCGGATCGCCGCCTCAAGCTGTCACGATGGTGCTGGATACAGGGAGTGAACTCCCCTGGCTTAACTGCAAAAAAAAAACCCAAACTTTGACCTCTGTTTTTAACCCACTTTCTTCCTCTTCTTACTCGCGAATCCCCTGCATTTCCCCCATTTGTCAGAAGCAAACCCGAGACTTACCCAACCCGGTTGTATGCGACGAAGAAAAACTATGCAATGTCTTTGTCTCATACGCTGACGGCTCGTCTCTCGAGGGTAATCTTGCATCCGACACGTTTCGAATCGGGTCGTTGAATAAACCCGGAACTTTATTCGGGTGTATGGGTTTGGGTTCGAGTTCGAATCCGCAGGAGGATGCGAAGACCACTGGGCTAATGGGGATGAACCGGGGGTCGCTTTCGTTTGTGACTCAATTGGGTCTGTCGAAATTCTCTTACTGCATATCGGGTCGTGATTCCTCCGGCGTTCTGATTTTAGGCGAAGGTAATCATTCGTGGGTTGGGAATATGGCGTACACGCCGTTGGTTCAAATGTCGACGCCATTGCCGTCGTACGATCGGTTCGCGTACACAGTCAAACTGGAGGGAATTAAAGTGGGGAACAAAATCCTGGCGCTGGAGAAATCAATTCTGGTTCCGGACCACACCGGCGCCGGGCAGACCATGGTGGATTCCGGGACCCAGTTCACGTTTCTTCTGGGGCCGGTGTACACGGCTTTAAAGAACGAGTTTCTGGTACAAACGAAGGGCGTTTTGGTTCCACTGGGTGATCCGAATTTCGTGTTCCAAGGAGCAATGGACTCGTGCTTCCGAGTACCGGCGAATCAGGGGAAGCTTCCGCCGCTGCCGACGGTGAGTCTAATGTTGAATGGGGCGGAGATGGTTGTGGGCGGGGAGTTGCTGCTGTACCGAGTGCCGGGAATGGTGAAGGGTGGTGATTGGGTGTATTGCATGACGTTTGGGAACTCGGATTTGTTGGGAATAGCGGCGTTTGTGATTGGGAATCATCATCAACAGAACTTGTGGATGGAATATGATCTGGCGAAATCAAGGCTGGGATTTGTCGAGACCAGAGGAGACGGGTCACAACAAGCAACTCAACACGTCCGAGTCACCTCCGGCCATCGACTCGCTCCCCCATCTTCTCCGTCGCTACCGTCGGGTTATCATTTTTCACGTAATTTTAGCATGCCCCATCATCGTAACTTTTTGATTCCAAGCCATCCTTGTTGTTTTTGGACCAACAAAATCAACCCAATTTACTCGATTCTGTTCTGTAGGTCTCGGATTTCTCTCATCAAGGATTAA 1485 50.37 MNFFLHLLQLLVFLLCFKQSLCFCATQAMVLPLKTETGLNSQPSNKLSFHHNVTLTVELTVGSPPQAVTMVLDTGSELPWLNCKKKTQTLTSVFNPLSSSSYSRIPCISPICQKQTRDLPNPVVCDEEKLCNVFVSYADGSSLEGNLASDTFRIGSLNKPGTLFGCMGLGSSSNPQEDAKTTGLMGMNRGSLSFVTQLGLSKFSYCISGRDSSGVLILGEGNHSWVGNMAYTPLVQMSTPLPSYDRFAYTVKLEGIKVGNKILALEKSILVPDHTGAGQTMVDSGTQFTFLLGPVYTALKNEFLVQTKGVLVPLGDPNFVFQGAMDSCFRVPANQGKLPPLPTVSLMLNGAEMVVGGELLLYRVPGMVKGGDWVYCMTFGNSDLLGIAAFVIGNHHQQNLWMEYDLAKSRLGFVETRGDGSQQATQHVRVTSGHRLAPPSSPSLPSGYHFSRNFSMPHHRNFLIPSHPCCFWTNKINPIYSILFCRSRISLIKD 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21438847 21440754 + CmoCh04G030710.1 Cmo04g03071 382046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g03071 494 Gene3D Acid Proteases 39 220 IPR021109 -
Cmo04g03071 494 Pfam Xylanase inhibitor C-terminal 248 414 IPR032799 -
Cmo04g03071 494 ProSiteProfiles Peptidase family A1 domain profile. 55 414 IPR033121 -
Cmo04g03071 494 CDD pepsin_A_like_plant 54 416 IPR034161 -
Cmo04g03071 494 Pfam Xylanase inhibitor N-terminal 57 219 IPR032861 -
Cmo04g03071 494 PANTHER ASPARTYL PROTEASE-RELATED 6 424 IPR001461 GO:0004190|GO:0006508
Cmo04g03071 494 Gene3D Acid Proteases 221 426 IPR021109 -
Cmo04g03071 494 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 6 424 - -
Cmo04g03071 494 SUPERFAMILY Acid proteases 55 417 IPR021109 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01246 Cmo04g03071 CCT
Cmo04g00206 Cmo04g03071 CCT
Cmo04g03071 Cmo04g00206 ECH
Cmo04g03071 Cmo04g01246 ECH
Cmo04g00206 Cmo04g03071 ECH
Cmo04g01246 Cmo04g03071 ECH
Cmo04g03071 Cmo15g00107 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03071 Cmo-Chr4:21438847 Cmo01g00977 Cmo-Chr1:6374300 9.08E-68 dispersed
Cmo14g00128 Cmo-Chr14:562011 Cmo04g03071 Cmo-Chr4:21438847 3.54E-175 wgd
Cmo15g00107 Cmo-Chr15:519475 Cmo04g03071 Cmo-Chr4:21438847 0 wgd
Cmo04g03071 Cmo-Chr4:21438847 Cmo06g00287 Cmo-Chr6:1430454 3.68E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g03071 - - csv:105435736 634.795