Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g03072 | ATGAGTTTTGTTTTCCGTGGAACACGAGTTCCAGACATAGAAAATGGTCTCCCTGGATTTATACCTGAGCGGCGTGCAATGCGTGTTCATGCAGCACGCCCTGTTAACTCGAACTCACTTGCCTTTCTTGTCACAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTGTTTTTAATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGTCTTCTGGGTCACACTGAATTGAGGTTGCATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATAGGGAATTTGATGATTTAGACTATGAAACTTTGAGAGCTTTGGATTCTGACAATGTTCCAACAACACCGTCAATGAGCGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCTGCTGCGAATCAACAAGCTTCATCTTCAGAATCCAATGAGAAGAGACCAGATTCAGTCAATGCAGTTAGCGGTACCAAGTCCTTACAGGATGAACTTACATGCAGTGTTTGCTTAGAGCAATTCCATGCGAACTGCATAGATCCGTGGCTGGGGCAGCAGGGAACATGTCCTGTTTGCAAATTCAGAGCGGTGCCCGGGTGGTCGGAGCAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAA | 783 | 45.85 | MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDPAANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLEQFHANCIDPWLGQQGTCPVCKFRAVPGWSEQGQGETDAYMV | 260 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 21441556 | 21444274 | + | CmoCh04G030720.1 | Cmo04g03072 | 382047 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g03072 | 260 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 244 | IPR013083 | - | |
| Cmo04g03072 | 260 | MobiDBLite | consensus disorder prediction | 171 | 204 | - | - | |
| Cmo04g03072 | 260 | MobiDBLite | consensus disorder prediction | 177 | 204 | - | - | |
| Cmo04g03072 | 260 | PANTHER | TARGET OF ERK KINASE MPK-1 | 1 | 259 | - | - | |
| Cmo04g03072 | 260 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SDIR1 | 1 | 259 | - | - | |
| Cmo04g03072 | 260 | SUPERFAMILY | RING/U-box | 207 | 249 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g03072 | Cmo-Chr4:21441556 | Cmo14g01926 | Cmo-Chr14:14284340 | 1.47E-06 | dispersed | |
| Cmo04g03072 | Cmo-Chr4:21441556 | Cmo15g00107 | Cmo-Chr15:519475 | 1.01E-161 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g03072 | K16283 | - | csv:101216306 | 440.654 |