Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g03072 ATGAGTTTTGTTTTCCGTGGAACACGAGTTCCAGACATAGAAAATGGTCTCCCTGGATTTATACCTGAGCGGCGTGCAATGCGTGTTCATGCAGCACGCCCTGTTAACTCGAACTCACTTGCCTTTCTTGTCACAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTGTTTTTAATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGTCTTCTGGGTCACACTGAATTGAGGTTGCATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATAGGGAATTTGATGATTTAGACTATGAAACTTTGAGAGCTTTGGATTCTGACAATGTTCCAACAACACCGTCAATGAGCGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCTGCTGCGAATCAACAAGCTTCATCTTCAGAATCCAATGAGAAGAGACCAGATTCAGTCAATGCAGTTAGCGGTACCAAGTCCTTACAGGATGAACTTACATGCAGTGTTTGCTTAGAGCAATTCCATGCGAACTGCATAGATCCGTGGCTGGGGCAGCAGGGAACATGTCCTGTTTGCAAATTCAGAGCGGTGCCCGGGTGGTCGGAGCAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAA 783 45.85 MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDPAANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLEQFHANCIDPWLGQQGTCPVCKFRAVPGWSEQGQGETDAYMV 260
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 21441556 21444274 + CmoCh04G030720.1 Cmo04g03072 382047
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g03072 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 244 IPR013083 -
Cmo04g03072 260 MobiDBLite consensus disorder prediction 171 204 - -
Cmo04g03072 260 MobiDBLite consensus disorder prediction 177 204 - -
Cmo04g03072 260 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
Cmo04g03072 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 259 - -
Cmo04g03072 260 SUPERFAMILY RING/U-box 207 249 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03072 Cmo-Chr4:21441556 Cmo14g01926 Cmo-Chr14:14284340 1.47E-06 dispersed
Cmo04g03072 Cmo-Chr4:21441556 Cmo15g00107 Cmo-Chr15:519475 1.01E-161 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g03072 K16283 - csv:101216306 440.654