Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g03081 ATGGAGGAAAATTCAAGCTTTGTTTCAGAATCGACGCTCACAACCGCCATGGAAGCAGAGCCTCAAGAAGAAGACAGAGACCCAGAAAGCAATCCATTAAACCAACCCCTTCTCAAGAGAAGCAGAACTCTCTCTTCCAGTCCTCTCGCCATTGTTGGAACCAAAGTTTCTCTGATCGAGAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAACATGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCGAAATGGACATTGGCTTGTCTTGTTGGACTCCTTACAGGAATCATTGCTACTCTCATCAATCTCGCCATTGAAAACATTGCTGGATACAAGCTTTTGAAAGTGGTTGAATACATAAAAGAAGAAAGGTTAGTATTTAGTACATCCCCCCAATCGGACATGGTTTTGTTCGTCTGCAAAACGAGGAATTTCATGAACCCAAAATTTCTGATTTTATACTTGATGGGGTTCGCCTACTTTACCACTGCCAATTTCCTTCTCACTTTGGTTGCTGCTGTTCTCTGTGTATGGTTTGCTCCCACTGCAGCTGGGCCTGGCATACCGGAAATCAAAGCCTATCTCAATGGCATAGATACTCCTAATATGTTTGGCGCCACAACGCTGATCGTTAAGATAATTGGGAGCATTGGGGCAGTGGCAGCAGGGCTAGATCTTGGGAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCCTCCTTACTTGGGCAAGGCGGGACCGATAATTATCGAGTGAAATGGACATGGCTACGCTATTTCAACAACGATCGGGATCGTCGAGATCTCATCACTTGCGGGGCGTCGTCGGGGGTTTGTGCAGCGTTCCGAGCTCCAGTTGGGGGTGTTCTATTTGCTCTAGAAGAGGTGGCTACTTGGTGGAGGAGTGCCTTGCTGTGGAGGACATTTTTTAGCACAGCCATTGTTGTGGTGGTGCTAAGAACATTCATTGAAGTATGCAAGGCTGGTGACTGTGGGCTGTTTGGTGAAGGAGGGCTTATAATGTTTGATGTCAGTGGCGTTTCTGTGAGTTACCGTATTATGGACATCATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGGAGTCTTTACAACCATCTTTTGCACAAAGTTCTGAGAGTTTACAACCTCATAAACCAGAAGGGAAAAATGCAGAAGCTGTTACTAAGCTTAGGAGTTTCGCTATTCACTTCGATTTGCCAGTACAGTCTCCCTTACCTTGTCCAATGCACTCCCTGCAACCCTTCTCTTCCAGATTCCGTTTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAATTCAACTGTCCAAAAGGCCATTACAACGACCTCGCTACCCTTCTCCTTACCACCAACGACGACGCCGTTCGAAACATCTTCTCCATCAACACTCCGGCCGAGTTCCAGCCCCTTTCCCTTGTGATCTTCTTCCTTCTCTACTGCGTTTTAGGGTTAATCACCTTCGGCATTGCCGTCCCCTCCGGTCTCTTCCTTCCGATCATCTTGATGGGCTCTGGCTATGGCCGACTCATCGGCCTTCTCATGAAACCCTACACGAATCTCGATCAAGGACTCTTGGCTGTTCTCGGAGCTGCCTCGTTAATGTCCGGCTCGATGAGGATGACGGTTTCGCTCTGTGTTATATTCCTCGAGCTCACGAATAATCTCCTCCTGCTTCCGATTACGATGATTGTCCTTCTGATATCGAAAACCGTCGGGGACAGTTTTAACCCTAGTATTTATGAGATTATTCTGCACTTGAAAGGGCTTCCGTTCCTGGACGCAAATCCGGAGACGTGGATGAGGAACATCACGGTCGGCGATCTCGCCGACGCAAAACCGGCGGTGGTAACGCTGCGGGGATTGGAGAAGGTGTCTCGGATTGTAGAGGTTCTTAAGAACACGACGCACAATGGATTCCCTGTAGTGGACGCGGAAGCGGTGGTGCCGCCAGTGGGGATGGCGGTGGGCGCGACGGAGCTGCACGGAGTGGTATTGAGAAAGCATTTGCTGCAGTTGCTGAAGAAGAAATGGTTCTTGAGAGAGAGGAGGAGGACGGAGGAATGGGAAGTGAGGGAGAAATTTACATGGGTTGAATTAGCGGAGAGGGAAGGGAAGATCGAGGAACTTGCAGTGACGAAGGAGGAGATGGAAATGTACGTTGATCTTCATCCTCTGACGAACACAACGCCGTATACAGTGATTGAAAGCATGTCGGTGGCCAAAGCTCTGGTTCTGTTCCGGCAAGTGGGGCTTCGGCATTTGCTGATTGTGCCCAAATATGAAGCAGCTGGGGTAAGCTCTGGTTCTTCTTCTTCTTCCTCCTCTGTACACATCCATTGCAGGCCTGAAACAGAGCTCTGTGTTCCTCCAGTAATTGGGATATTGACGAGGCAGGATTTAAGGCCATATAACATCCTGACTGCATTTCCTCATCTGACCAGAATCAAAAGCAACCACAAAGGGAACTAA 2526 48.46 MEENSSFVSESTLTTAMEAEPQEEDRDPESNPLNQPLLKRSRTLSSSPLAIVGTKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVEYIKEERLVFSTSPQSDMVLFVCKTRNFMNPKFLILYLMGFAYFTTANFLLTLVAAVLCVWFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEVCKAGDCGLFGEGGLIMFDVSGVSVSYRIMDIIPVAIIGLLGGFLGSLYNHLLHKVLRVYNLINQKGKMQKLLLSLGVSLFTSICQYSLPYLVQCTPCNPSLPDSVCPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSINTPAEFQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMKPYTNLDQGLLAVLGAASLMSGSMRMTVSLCVIFLELTNNLLLLPITMIVLLISKTVGDSFNPSIYEIILHLKGLPFLDANPETWMRNITVGDLADAKPAVVTLRGLEKVSRIVEVLKNTTHNGFPVVDAEAVVPPVGMAVGATELHGVVLRKHLLQLLKKKWFLRERRRTEEWEVREKFTWVELAEREGKIEELAVTKEEMEMYVDLHPLTNTTPYTVIESMSVAKALVLFRQVGLRHLLIVPKYEAAGVSSGSSSSSSSVHIHCRPETELCVPPVIGILTRQDLRPYNILTAFPHLTRIKSNHKGN 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21488862 21492086 + CmoCh04G030810.1 Cmo04g03081 382056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g03081 841 Gene3D - 616 788 IPR046342 -
Cmo04g03081 841 PRINTS Chloride channel signature 220 239 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g03081 841 PRINTS Chloride channel signature 598 612 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g03081 841 PRINTS Chloride channel signature 542 558 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g03081 841 PRINTS Chloride channel signature 560 579 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g03081 841 PRINTS Chloride channel signature 189 206 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g03081 841 PRINTS Chloride channel signature 284 303 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g03081 841 PRINTS Chloride channel signature 510 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g03081 841 CDD ClC_6_like 60 611 - -
Cmo04g03081 841 SUPERFAMILY CBS-domain pair 615 778 IPR046342 -
Cmo04g03081 841 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 805 835 - -
Cmo04g03081 841 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 25 785 - -
Cmo04g03081 841 SUPERFAMILY Clc chloride channel 69 613 IPR014743 -
Cmo04g03081 841 Gene3D Clc chloride channel 82 613 - -
Cmo04g03081 841 MobiDBLite consensus disorder prediction 1 18 - -
Cmo04g03081 841 MobiDBLite consensus disorder prediction 1 36 - -
Cmo04g03081 841 Pfam Voltage gated chloride channel 177 591 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g03081 841 PRINTS Plant CLC chloride channel signature 305 313 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g03081 841 PRINTS Plant CLC chloride channel signature 337 344 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g03081 841 PRINTS Plant CLC chloride channel signature 462 478 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g03081 841 PRINTS Plant CLC chloride channel signature 319 329 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g03081 841 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g03081 841 PANTHER CHLORIDE CHANNEL PROTEIN CLC-A 805 835 - -
Cmo04g03081 841 PANTHER CHLORIDE CHANNEL PROTEIN CLC-A 25 785 - -
Cmo04g03081 841 CDD CBS_pair_voltage-gated_CLC_euk_bac 631 822 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03081 Cmo-Chr4:21488862 Cmo15g00081 Cmo-Chr15:411910 0 dispersed
Cmo04g03081 Cmo-Chr4:21488862 Cmo04g00948 Cmo-Chr4:4837882 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g03081 K05016 - csv:101210008 1399.8