Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g03093 ATGGAAGTTGAACCACAATCGGAGTTTCCGTACTGGAAGCCTTTCCAACGGAGGTTCGACCCTGATTCTCCCTTCTTCGCCTCTGGAAATGTCGAGCGCGAAATCTTAGCCAAACAGGTTGCCTTGGATTTAACCGAAGATGAAAAGTTCCAGCTTCATAATATGGTAGTTGATGTCGGCAGGAAAATCTTTTGCCCAATAGTCGGTTGTGGTGCGCACTTGAAATCGCTGGATGACTTTGAAGATCACTACAATTCACGTCATACTGCCTCTTGTTCAGTTTGCCCAAGAGTATATCCAACATCACGACTGCTTAGTCTGCATGTGTCTGAGGCACACGACTCGTTCTTTCAAGCCAAAGTTGCTCGTGGCTATGACATGTATGAATGCCTGGTGGAAGGTTGTGGGTTGAAGTTCAAGAGCTACAAAAGCAGACAGCAGCATCTAGTGGACAAACATAAGTTTTCTGCTTCATTTGAATTCTTTAAGAAGGCTCCTCCTTCTAAGAAACAAAGACAGAAATTATATCGAAAACAAGTACTTCAACCAAGGGAAGAAACTTCCATAATGGAAGTCGAGAATGAAACTATGGATGGCCTCATTTTGGGAGTATCTAAACTAAGTACTTCGGACTCAACTCCATCATCAGTCAGCTTTGGTCGAAGGCACACTCGAGGGTTAACGTTTGTTCCTCGAGCAGTTCAGCGTGAAAAAGTTTCGGACTCCTCAACAGCAGGTTCTTCTCAAGGGTATCTGGTGCTGCAACGTGGTTCGCATTCGCTCCCCGTCTTCAATCCTGTTTCGTCCCTTCCACTTGTTCATTCATTTTCTGCGCTTCAAAATTTGTTTCTGGTCACAGCGGAAATGCCTGTTACAGCCATGACCTTAAACCTAGTTGGTGCATTCAGAGGCCTCTCTCTGGTCTCTTCCTCTTCTTCTTCCTTCTTCAAGGGCGATTTCGGCTCCATTCAACCCCCTCCCAACCTCTCCGTCTCCTTTCCTAACAGATTCCCTTTAACCATAGAAAGTGCACACAAGAAAGGAGCTGGAAGCACCAAGAATGGCCGCGATTCTAAAGGCCAGAGGCTCGGCGTCAAAATCTTTGGTGATCAAGTCGCCAAGCCCGGTTCCATTATCGTCCGCCAGCGCGGAACCAAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAATTTGAGAAGTATGGACCTGACAAGAAGAAGGTGAGTGTGTACCCAAGAGAAGTGCAGCCTGAGAATCCCAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGGAAGGAAGGCGTTGTTGCTCAAGCTCAACTAGTATTAGCTTCCACTGATGCACCAGAAACCAATCCAATTGGCTGA 1437 46.42 MEVEPQSEFPYWKPFQRRFDPDSPFFASGNVEREILAKQVALDLTEDEKFQLHNMVVDVGRKIFCPIVGCGAHLKSLDDFEDHYNSRHTASCSVCPRVYPTSRLLSLHVSEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYKSRQQHLVDKHKFSASFEFFKKAPPSKKQRQKLYRKQVLQPREETSIMEVENETMDGLILGVSKLSTSDSTPSSVSFGRRHTRGLTFVPRAVQREKVSDSSTAGSSQGYLVLQRGSHSLPVFNPVSSLPLVHSFSALQNLFLVTAEMPVTAMTLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNRFPLTIESAHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLVLASTDAPETNPIG 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21549575 21556058 - CmoCh04G030930.1 Cmo04g03093 382068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g03093 478 Gene3D - 348 457 - -
Cmo04g03093 478 TIGRFAM L27: ribosomal protein bL27 344 423 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cmo04g03093 478 ProSitePatterns Ribosomal protein L27 signature. 376 390 IPR018261 GO:0003735|GO:0005840|GO:0006412
Cmo04g03093 478 SUPERFAMILY Ribosomal L27 protein-like 344 425 - -
Cmo04g03093 478 Hamap 50S ribosomal protein L27 [rpmA]. 343 426 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cmo04g03093 478 Pfam Ribosomal L27 protein 344 423 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cmo04g03093 478 PRINTS Ribosomal protein L27 signature 346 370 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cmo04g03093 478 PRINTS Ribosomal protein L27 signature 371 395 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cmo04g03093 478 PRINTS Ribosomal protein L27 signature 396 420 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cmo04g03093 478 PANTHER UNCHARACTERIZED 5 238 IPR039258 -
Cmo04g03093 478 ProSitePatterns Zinc finger C2H2 type domain signature. 130 153 IPR013087 -
Cmo04g03093 478 ProSitePatterns Zinc finger C2H2 type domain signature. 92 113 IPR013087 -
Cmo04g03093 478 PANTHER ZINC FINGER PROTEIN 511 5 238 - -
Cmo04g03093 478 Coils Coil 436 456 - -
Cmo04g03093 478 SMART c2h2final6 90 113 IPR013087 -
Cmo04g03093 478 SMART c2h2final6 128 153 IPR013087 -
Cmo04g03093 478 SMART c2h2final6 63 88 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00111 Cmo-Chr13:624858 Cmo04g03093 Cmo-Chr4:21549575 3.42E-26 transposed
Cmo15g00077 Cmo-Chr15:400559 Cmo04g03093 Cmo-Chr4:21549575 8.25E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9761 PF01016 Ribosomal_L27 2.70E-35 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g03093 - - csv:101212859 444.121