Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g03125 ATGGCGGGAATGGATGGTTCGTGCGATCTCGCGGAACTCAGTAGAAGAGTTGACGATGCTGATTCGAATATGGGAAGGACGATCCAAATTTCATGGCCGAATCGGCGGCATCGTTTCCACACCGGGTTTGATCTGCCCACTATTTCAGACCTCTCTGTGGTCATTTTCTACTGTTATTTTAACTTAGATTCAGTCCATTTTACTCTTATGATTAGTCAACAGAGTATGAGCTCTTCATCCACTCAACTCTATGCTTCAAATATGGGTATCTATGAGCCATTTTACCAGATCAACTCATGGGGAAACGCCTACAGTCGTCCACTTTTATCGCCTATTATAAAAGTGGATGACTGTGTAGACAATAAACCCGAGTTAATTCCTTTTGAATCGATGGATCATCCTGAGAGCAGTCAAGAAATGAACAAACCAATTGATGATAAGGTTCAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTGGAAACTAGCCGTTTGAAGCTGGCACAATTGGAGCAAGAGCTAGAAAGAACCAAGCTGAAGGGTGTACACACAAGCTGTGTGGTAGATACCAGCCACTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAGTATAATCACTGGGTCGAGGAGCAACAGAGGCAGGTCACTGAACTGAGAAAAGCGTTGCAAGTTCATGTAACCGATATGGAACTCCAAATTTTGGTGGAGAGCAGCTTAAACCATTACCACAACTTGTTTTGCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGAGCATGGAGATCATCAGCAGAGCGTTTTTTCCTCTGGATTGGTGGATTTCGCCCATCCGAGCTGCTTAACGTTCTGAAGCCATACTTCGGGCCGTTAAACGAACAACAAAGAGCCGATATCCACAAGTTGCATCAGTCGTCTCGGCAAGCCGAAGACGCGCTCACACAGGGAATGGAAAAATTGCACCAGAATCTATCCCTCAGCATTGCCAATGATCCTCTTGGAAGCTATATTTCTCAGATGGGTGATGGGCTGGAGAGGCTAGAAGCATTGGAGAACTTTGTAAGCCAGCCGAGCGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAGTGTCTCACATCCTAACCACCAAACAAGCAGCACAAGGCTTGCTCGCTTTAGGCGAGTACTTCCATCGTCTCCGTGTTCTCAGTTCCCTCTGGACCACTCGACCTCGCGAACGCGGAGCCATGAAAGGTTCAGACATGTTCCAGCCACCATATTAA 1356 45.87 MAGMDGSCDLAELSRRVDDADSNMGRTIQISWPNRRHRFHTGFDLPTISDLSVVIFYCYFNLDSVHFTLMISQQSMSSSSTQLYASNMGIYEPFYQINSWGNAYSRPLLSPIIKVDDCVDNKPELIPFESMDHPESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKLKGVHTSCVVDTSHLGFGGLVNPGIAAFEMEYNHWVEEQQRQVTELRKALQVHVTDMELQILVESSLNHYHNLFCMKANAAKADVFYLMSGAWRSSAERFFLWIGGFRPSELLNVLKPYFGPLNEQQRADIHKLHQSSRQAEDALTQGMEKLHQNLSLSIANDPLGSYISQMGDGLERLEALENFVSQPSVCYSFLEQADHLRQQTLKRVSHILTTKQAAQGLLALGEYFHRLRVLSSLWTTRPRERGAMKGSDMFQPPY 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21686648 21690544 + CmoCh04G031250.1 Cmo04g03125 382100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g03125 451 Pfam bZIP transcription factor 146 185 IPR004827 GO:0003700|GO:0006355
Cmo04g03125 451 Pfam Seed dormancy control 233 308 IPR025422 GO:0006351|GO:0043565
Cmo04g03125 451 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 150 165 IPR004827 GO:0003700|GO:0006355
Cmo04g03125 451 SMART brlzneu 143 206 IPR004827 GO:0003700|GO:0006355
Cmo04g03125 451 PANTHER TRANSCRIPTION FACTOR TGA9 76 437 - -
Cmo04g03125 451 ProSiteProfiles DOG1 domain profile. 216 434 IPR025422 GO:0006351|GO:0043565
Cmo04g03125 451 SUPERFAMILY Leucine zipper domain 147 184 IPR046347 GO:0003700|GO:0006355
Cmo04g03125 451 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 145 189 IPR004827 GO:0003700|GO:0006355
Cmo04g03125 451 Gene3D - 146 195 - -
Cmo04g03125 451 Coils Coil 166 193 - -
Cmo04g03125 451 PANTHER TRANSCRIPTION FACTOR TGA7 76 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00850 Cmo-Chr4:4241780 Cmo04g03125 Cmo-Chr4:21686648 7.99E-86 dispersed
Cmo04g03125 Cmo-Chr4:21686648 Cmo16g00731 Cmo-Chr16:3639103 2.37E-118 dispersed
Cmo15g00039 Cmo-Chr15:247678 Cmo04g03125 Cmo-Chr4:21686648 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9764 PF14144 DOG1 8.70E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g03125 K14431 - csv:101217648 638.647