Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00002 ATGGATCTGGAAACTGGGGTTTATCCCAAGTATGCTAAGAAGGATTCATGGAAGACAGTTCTGACTCTAGCTTTTCAGAGTCTTGGGGTCGTCTATGGTGATTTAAGCACCTCACCTCTATACGTGTATAGGAACACTTTTGCTGAAGAAGACATTGAACACTCGAAGACCAACGAAGAGATTTACGGCGTTTTGTCATTCATTTTCTGGACCCTTACCATTGTCCCTTTGCTCAAATATGTATTTATTGTGCTCAAAGCAGACGATAATGGCGAGGGAGGGACTTTTGCTCTCTACTCATTGTTGTGTCGACACGCCCGAGTCGGCTGGTTGCCCAATGTTCAAGCGGCAGACGAGGAGCTGGCTGAGTACAAGAAAGAAACCATAATTTTGCCACCCAAAAAAAGCTTTGCATCTAAGCTGAAATCCACGTTAGAATCGCATAAGGTATTGCAGACACTTCTGCTCATTCTGGCTTTGATCGGGACGTGTATGGTAATTGGCGACGGCATCTTAACGCCTGCTATTTCTGGTATTTATGGCATTCCCTTTCTTGGTTTTTTTTCTGCTGTCTCTGGACTGGAGTTCACGATGTCAAAACAGCATCATAAATATGTTGAAGTTCCAGCTGCGTGCATCATACTCATAGGCTTGTTCGCCCTTCAACATTATGGAACGCACAGGGTTGGGTTCTTGTTTGCTCCTATAGTTACAACATGGCTTCTGTGCATTAGCGCAATTGGTTTATACAACATCATTCACTGGAATCCTCATGTTTATCAAGCACTTTCTCCTTATCATATGTTCCTATTCTTGAAGAAAACAAGGAGAGGAGGTTGGATGTCACTAGGAGGGATTCTACTTTGTATAACTGGTTCAGAAGCCATGTTTGCTGATCTTGGACACTTTTCACAATCATCCATCCAGATTGCATTTAGCTTTATGGTGTATCCATCTTTGGTTTTAGCTTATATGGGGCAGGCTGCGTATCTATCTCAACATCATTCGATACCAAATGATTATCGAATTGGATTCTATATATCTGTTCCAGAGAAGTTACGTTGGCCTGTTCTAGTAATTGCCATCCTTGCTGCTGTAGTAGGAAGCCAGGCCATCATCACTGGAACTTTCTCGATTATTAAGCAATGCTCTGCTTTGAATTGCTTCCCCAGAGTCAAAATAGTTCATACATCATCTAAAATTCATGGTCAAATTTATATCCCTGAGATTAATTGGATCCTGATGCTTTTATGCTTAGCCGTTACAATTGGTTTCAGAGATACAAAACGTTTGGGTAATGCATCAGGCTTGGCAGTAATCACGGTGATGTTGGTGACGACCTGTTTAATGTCGTTGGTCATTGTGATTTGCTGGCACCAGAGTGTTGTCCTAGCAATTTGCTTTGTGGTCTTCTTTGGGTCAATTGAAGCCATGTATTTTTCAGCTTCTCTCATTAAGTTTCTAGAAGGAGCATGGGTTCCCATTGTGCTTGCCGTGGTCTTCATGATTATTATGTATGTGTGGCACTATGGAACGCTGAAGAAGTATGAATTTGATTTTCAAAATAAGGTCTCAATGAATTGGTTGCTTAGTGTGGGATCCAGTCTAGGTATTGTCCGAGTCCGCGGGATTGGCATTGTGCACACTGAACTTGTCTCAGGGCTTCCAGCAATGTTTTCACACTTCGTGACCAACCTTCCTGCGTTCCACCAGGTGGTGGTTTTTCTTTGCATCAAGTCTGTTCCAGTCCCACATGTTAAACCTGAAGAGCGGTTCCTAGTTGGTCGAATTGGAGCTCGTGAGTACAGGTTGTACAGGTGCGTTGTGCGATATGGATACAGAGATGTGCACAAGGATGACACCGAGTTTGAAAAAGATCTTGTATGTAGTATAGCTGAGTTTATAAGATCACAGAAGGTGGAATCCAGTGGTTGCAATGCTAATGCAGAGGATGATATTTGGAAGGAAAATGAGAGAATGACAGTAGTTGGAATGTGCTGTACGCATAGAGACGGAATTCAACTGCAAGAGGATGATGATGAAGAGTTGGGGGAGACGTCTGAGCATAGGGAAATAATGTCACCACGACGTCGGAATCGTATCGTCCGGGCACCCAGGAAAAGGGTGAGGTTTATTGTGCCGGAGAGTCCAAAAGTTGAGGCAACAGCAATGGAGGAACTGCAGGAGTTGATGGAAGCAAGGGAAGCAGGAGTTGCTTACATATTGGGTCAGGCGCATACTAAAGCAAAGCAGGGATCCAGCATGCTACGAAAGCTTATAATTAATTATGGGTATGAATTGTTAAGGAGGAATAGCAGGGGACCCAGTTACCCCCTCAATTTACCTCATGCGTCTACTCTTGAGGTAGGAATGTTGTACCATCTCTGA 2388 43.38 MDLETGVYPKYAKKDSWKTVLTLAFQSLGVVYGDLSTSPLYVYRNTFAEEDIEHSKTNEEIYGVLSFIFWTLTIVPLLKYVFIVLKADDNGEGGTFALYSLLCRHARVGWLPNVQAADEELAEYKKETIILPPKKSFASKLKSTLESHKVLQTLLLILALIGTCMVIGDGILTPAISGIYGIPFLGFFSAVSGLEFTMSKQHHKYVEVPAACIILIGLFALQHYGTHRVGFLFAPIVTTWLLCISAIGLYNIIHWNPHVYQALSPYHMFLFLKKTRRGGWMSLGGILLCITGSEAMFADLGHFSQSSIQIAFSFMVYPSLVLAYMGQAAYLSQHHSIPNDYRIGFYISVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALNCFPRVKIVHTSSKIHGQIYIPEINWILMLLCLAVTIGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVICWHQSVVLAICFVVFFGSIEAMYFSASLIKFLEGAWVPIVLAVVFMIIMYVWHYGTLKKYEFDFQNKVSMNWLLSVGSSLGIVRVRGIGIVHTELVSGLPAMFSHFVTNLPAFHQVVVFLCIKSVPVPHVKPEERFLVGRIGAREYRLYRCVVRYGYRDVHKDDTEFEKDLVCSIAEFIRSQKVESSGCNANAEDDIWKENERMTVVGMCCTHRDGIQLQEDDDEELGETSEHREIMSPRRRNRIVRAPRKRVRFIVPESPKVEATAMEELQELMEAREAGVAYILGQAHTKAKQGSSMLRKLIINYGYELLRRNSRGPSYPLNLPHASTLEVGMLYHL 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4477 8784 - CmoCh05G000020.1 Cmo05g00002 382137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00002 795 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 794 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cmo05g00002 795 TIGRFAM kup: potassium uptake protein 23 794 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cmo05g00002 795 Pfam K+ potassium transporter 24 615 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cmo05g00002 795 PANTHER POTASSIUM TRANSPORTER 6 1 794 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00296 Cmo-Chr4:1471607 Cmo05g00002 Cmo-Chr5:4477 0 dispersed
Cmo05g00002 Cmo-Chr5:4477 Cmo11g01702 Cmo-Chr11:12075480 0 dispersed
Cmo14g00647 Cmo-Chr14:3259642 Cmo05g00002 Cmo-Chr5:4477 0 wgd
Cmo04g01802 Cmo-Chr4:9073552 Cmo05g00002 Cmo-Chr5:4477 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00002 K03549 - tcc:18609411 1230.7