Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00005 ATGTACTATGTTTTTGTGAATTCAGGAAAAACTTTTCCTACATTAGATCCAAGGACTGGGGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAAAGATGTTGATCTTGCAGTTTCTGCTGCACGCAAGGCATTTGATGAAGGGCCTTGGCCTAGGATGACTGCTTATGAAAGATCAAAGATAATTTTGCGGTTTGCTGATTTGGTTGAAAAGAATGCTGAGGAAATTGCAGCACTCGAAACTTGGGACAATGGCAAAACATACGAACAGTCAGCAAAACTGGAAGTCCCAATGTTTGTACGCATCTTTCGATACTACGCCGGATGGGCCGATAAGATTCACGGACTCACTGTTCCAGCTGATGGCTCGTATAATGTGCAGACCTTGCACGAACCTATTGGTGTTGCAGGTCAAATCATTCCATGGAACTTTCCTCTGCTCATGTTTGCTTGGAAGGTTGGCCCAGCATTAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTCTCTATGTGGCCAAGCTGTTGCATGAGGCTGGACTACCTGAGGGCGTTCTGAATATTGTTTCCGGTTATGGACCCACCGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGATAAGCTTGCATTTACTGGATCAACCGAAACAGGGAAAGTAGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTCACATTGGAGCTTGGAGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTTGACAAAGCTGTGGAGATGGCACACTTCGCTCTCTTCTTCAACCAGGGACAATGTTGCTGTGCTGGTTCTCGTACTTTTGTTCATGAAAAAGTATATGATGAATTTATTGAAAAAGCAAGGAAACGGGCTGTGAACCGCGTTGTTGGTGATCCGTTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTGGATGGGGAACAATTCAAAAAGATTTTGAGATATATAAAATCTGGAATTGAAGGAGGAGCCACTCTTGAAGCTGGAGGAGAGAGGTTCGGTTCCAAGGGCTACTATGTCCAGCCAACAGTTTTCTCAAACGTCAAGGATGACATGACAATTGCACAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAAGAGATCGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCCGCAGGGGTGTTTACTCAAAACATCAACACAGCCAACAGGCTGACGCGTGCTTTGAGAGTCGGCTCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAATTCCTTTTGGAGGGTACAAGATGAGCGGACATGGGCGAGAAAAGGGCATTTACAGCCTCAGCAATTACCTGCAAGTGAAGGCTGTTGTCACTCCTTTGGAAAACCCTGCTTGGCTTTAG 1428 45.66 MYYVFVNSGKTFPTLDPRTGEVIANVAEGDAKDVDLAVSAARKAFDEGPWPRMTAYERSKIILRFADLVEKNAEEIAALETWDNGKTYEQSAKLEVPMFVRIFRYYAGWADKIHGLTVPADGSYNVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLLHEAGLPEGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFIEKARKRAVNRVVGDPFLGGIEQGPQVDGEQFKKILRYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMTIAQEEIFGPVQTILKYKEIEEVIRRANASRYGLAAGVFTQNINTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLENPAWL 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19024 21105 + CmoCh05G000050.1 Cmo05g00005 382140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00005 475 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 241 248 IPR029510 GO:0016491
Cmo05g00005 475 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 247 436 IPR016163 GO:0016620
Cmo05g00005 475 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 9 465 IPR016162 GO:0016491
Cmo05g00005 475 Pfam Aldehyde dehydrogenase family 8 465 IPR015590 GO:0016491
Cmo05g00005 475 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 269 280 IPR016160 GO:0016491
Cmo05g00005 475 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 4 475 - -
Cmo05g00005 475 SUPERFAMILY ALDH-like 7 469 IPR016161 GO:0016491
Cmo05g00005 475 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 4 475 - -
Cmo05g00005 475 CDD ALDH_F2BC 5 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00005 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101202756 897.116
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00005 Cmo-Chr5:19024 Cmo11g00105 Cmo-Chr11:548605 0 dispersed
Cmo05g00005 Cmo-Chr5:19024 Cmo12g00001 Cmo-Chr12:477 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00644 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.6 1.5e-213 739.6
Cmo11g00602 . 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 68.7 1.5e-208 723.0
Cmo12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 6.4e-159 558.1
Cmo05g00005 . 3 475 Aldehyde Dehydrogenase Gene Family AT3G24503 55.3 2.1e-154 543.1
Cmo11g00105 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.7e-154 542.0
Cmo11g00105 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 4.2e-257 884.4
Cmo12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 76.8 3.2e-249 858.2
Cmo05g00005 . 8 475 Aldehyde Dehydrogenase Gene Family AT3G48000 79.1 8.7e-231 797.0
Cmo10g00644 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.5 1.1e-161 567.4
Cmo11g00602 . 17 501 Aldehyde Dehydrogenase Gene Family AT3G48000 52.8 3.7e-157 552.4
Cmo12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 1.9e-169 592.8
Cmo11g00105 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 6.7e-167 584.3
Cmo05g00005 . 3 319 Aldehyde Dehydrogenase Gene Family AT1G23800 81.1 3.5e-155 545.4
Cmo10g00644 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 4.8e-104 375.6
Cmo11g00602 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 5.8e-102 368.6
Cmo01g01433 CST 3 485 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 1.7e-181 633.3
Cmo09g00776 CST 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 5.9e-179 624.8
Cmo09g00775 . 66 523 Aldehyde Dehydrogenase Gene Family AT4G34240 64.0 4.1e-172 602.1
Cmo09g00775 . 111 521 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 3.7e-176 615.1
Cmo01g01433 CST 73 483 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 8.2e-176 614.0
Cmo09g00776 CST 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 1.2e-174 610.1
Cmo16g00705 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 61.5 2.3e-182 636.0
Cmo02g01283 . 5 497 Aldehyde Dehydrogenase Gene Family AT4G36250 53.8 5.0e-153 538.5
Cmo20g00311 . 39 553 Aldehyde Dehydrogenase Gene Family AT1G79440 75.0 6.8e-228 787.3
Cmo02g00667 . 29 447 Aldehyde Dehydrogenase Gene Family AT1G79440 55.2 4.5e-147 518.8
Cmo11g01452 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.3 5.3e-245 844.3
Cmo03g00888 . 211 615 Aldehyde Dehydrogenase Gene Family AT2G14170 69.4 1.9e-170 596.7
Cmo10g00162 . 1 531 Aldehyde Dehydrogenase Gene Family AT1G74920 76.1 2.6e-245 845.1
Cmo10g00162 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G48170 76.7 4.8e-247 850.9
Cmo12g01175 . 72 567 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 1.9e-267 918.7
Cmo05g01265 . 23 143 Aldehyde Dehydrogenase Gene Family AT2G24270 81.1 2.2e-50 197.6
Cmo13g00961 . 32 590 Aldehyde Dehydrogenase Gene Family AT5G62530 75.2 5.2e-255 877.5
Cmo17g00356 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 2.3e-277 951.8
Cmo08g01242 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.3 2.5e-271 931.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00005 Cmo_Chr05 FPKM 5.206186 4.396807 6.607953 7.342086 19.491306 20.087784 18.493147 14.043175 14.262895 18.14562