Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00035 ATGGAACCACCTTTTCTGTTATGGAATCCGGTTTTTGTAGTTTTGGCACTCCTCCAAGTTTCTTCTGCTACGCTCTCTCCTTCTGGTGTGAACTACGAAGTCGTAGCTCTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTCTTGGAGAATTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGTTCTCCCGATGGATATGTTTCTGCTTTGGGGCTACCGAGCCAGAGTTTGTCTGGGGTCTTATCACCGGGGATTGGAAACCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATTGGAAAATTAGAGAACTTGCAGACTCTTGATCTCTCCAACAATGTATTCAGTGGTGTAATACCCAGTTCCCTCGGAGACTTGAAGAAGCTTAATTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTTGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTATTGGTAACCCTCTGAGCTGTGGTCCAAACAACTGTTCTGCTATCTTTCCAGAGCCCTTGTCGTTTGCTCCAGATGCTCTCGAAGGAAATTTGGGATTTGGTAAGAGCCATCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTCTTATTGTATTAGTCCTTATTGGACTACTGGTTTGGTGGAGATACAGACACAACCAGCAGATCTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACTCAAAGAATATTTTGGGTAGAGGTGGGTTTGGAATTGTGTTCAAGGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACTGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTGCACCGAAACCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTGCTGGTTTACCCATTTATGCCCAATGGCAGCGTTGCATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCGTTGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCCAAAATTATCCATCGTGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCCGTGGTTGGAGACTTTGGGTTGGCCAAACTTTTGGATCACAGAGATTCTCACGTGACTACAGCGGTGCGTGGCACTGTTGGCCATATTGCTCCAGAGTACTTATCAACAGGACAATCGTCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTTCTTGAGTTAATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGCGCAAACCAGAAGGGTGTGATGCTTGATTGGGTGAAAAGGTTGCACCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAAGCAACTACGACAGAGTTGAGCTAGAGGAAATGGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGACCCAAAATGTCTGAAGTACTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCACAGCACGTCGAGACGCCAAGATACCGACTGTGTGAGAAACCCCCTCAACTGTACTCAGATTATATAGAAGAATCTTCTTTGATCGTGGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1866 45.02 MEPPFLLWNPVFVVLALLQVSSATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFSGVIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIIGNPLSCGPNNCSAIFPEPLSFAPDALEGNLGFGKSHRKAIAFGASFSAALIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVFKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKRLHQEGKLNMMVDKDLRSNYDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHVETPRYRLCEKPPQLYSDYIEESSLIVEAMELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 125060 128783 + CmoCh05G000350.1 Cmo05g00035 382170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00035 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Cmo05g00035 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Cmo05g00035 621 SUPERFAMILY Protein kinase-like (PK-like) 282 579 IPR011009 -
Cmo05g00035 621 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Cmo05g00035 621 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
Cmo05g00035 621 SUPERFAMILY L domain-like 31 200 - -
Cmo05g00035 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Cmo05g00035 621 Pfam Protein kinase domain 299 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00035 621 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Cmo05g00035 621 SMART serkin_6 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00035 621 PANTHER PROTEIN NSP-INTERACTING KINASE 3 6 621 - -
Cmo05g00035 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 621 - -
Cmo05g00035 621 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00035 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01329 Cmo-Chr3:9910217 Cmo05g00035 Cmo-Chr5:125060 0 dispersed
Cmo05g00035 Cmo-Chr5:125060 Cmo18g01090 Cmo-Chr18:11413289 0 dispersed
Cmo07g00173 Cmo-Chr7:916091 Cmo05g00035 Cmo-Chr5:125060 1.50E-23 dispersed
Cmo10g00196 Cmo-Chr10:878673 Cmo05g00035 Cmo-Chr5:125060 5.11E-103 dispersed
Cmo16g00281 Cmo-Chr16:1265397 Cmo05g00035 Cmo-Chr5:125060 0 dispersed
Cmo16g00762 Cmo-Chr16:3822870 Cmo05g00035 Cmo-Chr5:125060 0 dispersed
Cmo12g00017 Cmo-Chr12:102001 Cmo05g00035 Cmo-Chr5:125060 8.09E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74334 PF00069 Pkinase 3.00E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00035 - - csv:101208885 1162.13